CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97601	Canola	cytosol, mitochondrion, plastid	99.85	99.85
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	99.69	96.84
CDY20084	Canola	cytosol, mitochondrion, peroxisome	95.2	95.5
CDY32340	Canola	cytosol, mitochondrion, peroxisome	94.43	94.87
AT3G14790.2	Thale cress	mitochondrion	95.51	92.5
CDY60210	Canola	cytosol, mitochondrion, peroxisome	92.26	89.22
CDY45116	Canola	cytosol, mitochondrion, peroxisome	91.49	88.87
CDY24092	Canola	cytosol, mitochondrion, peroxisome	91.02	88.42
CDY25850	Canola	cytosol, mitochondrion, peroxisome	56.81	85.75
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	84.83	84.44
CDY71423	Canola	cytosol, nucleus	55.73	83.53
CDY40003	Canola	cytosol, mitochondrion, plastid	86.53	83.43
CDY35137	Canola	cytosol, mitochondrion, plastid	86.22	83.13
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	80.03	81.29
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	84.37	81.1
Os03t0278200-01	Rice	nucleus, plasma membrane	84.67	81.04
EER95086	Sorghum	cytosol, mitochondrion, plastid	83.9	80.65
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	83.59	80.36
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	77.24	80.35
TraesCS4A01G099200.1	Wheat	cytosol	83.9	80.3
CDX88455	Canola	cytosol, peroxisome, plastid	87.77	80.2
Zm00001d028654_P002	Maize	cytosol	82.82	79.61
TraesCS4D01G206000.1	Wheat	mitochondrion	83.9	79.47
TraesCS4B01G205100.3	Wheat	mitochondrion	83.75	79.33
CDY45969	Canola	cytosol	36.38	79.12
CDY45471	Canola	cytosol	36.07	78.45
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	78.02	76.71
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	76.63	75.69
Solyc08g069110.2.1	Tomato	unclear	76.01	75.42
HORVU4Hr1G059120.2	Barley	plastid	83.75	74.83
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.84	74.07
KRH16155	Soybean	cytosol	74.92	73.89
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	69.19	73.88
CDY57072	Canola	cytosol, extracellular, peroxisome	35.91	71.83
CDX98052	Canola	cytosol	35.76	71.52
CDX81794	Canola	plastid	35.45	65.99
CDY72469	Canola	cytosol	12.38	60.61
CDY71965	Canola	cytosol, mitochondrion	9.6	26.05
CDY47846	Canola	golgi	13.0	24.49
CDY08378	Canola	golgi	12.85	24.06
CDY50431	Canola	cytosol	12.54	23.28
CDY47611	Canola	golgi	12.38	22.99
CDY03506	Canola	cytosol, golgi	12.38	22.99
CDY21065	Canola	cytosol	12.38	22.79
CDY31278	Canola	cytosol	12.38	22.79
CDX86828	Canola	golgi	12.07	22.48
CDY40862	Canola	cytosol, golgi	12.07	22.48
CDY47346	Canola	cytosol	12.07	22.22
CDY49193	Canola	cytosol	12.07	22.22
CDY69000	Canola	cytosol	11.46	22.09
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	13.93	20.74
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	13.93	20.69
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	13.62	20.51
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	13.62	20.51
CDX78998	Canola	mitochondrion	13.0	20.44
CDX82768	Canola	mitochondrion	12.85	20.19
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.31	20.0
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.31	19.77
CDX77481	Canola	endoplasmic reticulum	13.78	19.65
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	13.16	19.54
CDY09555	Canola	mitochondrion	12.69	19.52
CDY02312	Canola	mitochondrion	12.69	19.52
CDX92990	Canola	endoplasmic reticulum	13.78	19.52
CDX85133	Canola	endoplasmic reticulum	13.78	19.52
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.85	19.35
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.85	19.35
CDY53207	Canola	endoplasmic reticulum	13.62	19.34
CDY49498	Canola	golgi	12.23	19.17
CDY49015	Canola	golgi	12.23	19.17
CDY29113	Canola	golgi	12.23	19.17
CDY13102	Canola	golgi	12.23	19.17
CDY64583	Canola	endoplasmic reticulum	13.62	19.13
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	13.62	19.13
CDY52524	Canola	golgi	12.54	19.1
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.69	19.07
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	12.69	19.07
CDY31644	Canola	golgi	12.38	18.87
CDY49495	Canola	cytosol	2.32	15.31
CDY60264	Canola	plastid	12.54	13.26

Protein Annotations

EnsemblPlants:CDX98494	EnsemblPlantsGene:GSBRNA2T00106127001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363	ProteinID:CDX98494
ProteinID:CDX98494.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EDC475	MapMan:3.13.6.1	:

Description

BnaC05g38810D

Coordinates

chrLK031905:+:554950..557757

Molecular Weight (calculated)

72411.4 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.389

Length

646 amino acids

Sequence
(BLAST)

001: MATYKPKNIL ITGAAGFIAS HVANRLVRTY PDYKIVVLDK LDYCSNLKNL NPSKSSPNFK FVKGDIASAD LTHVDNSFGN SFEFTKNNIY GTHVLLEACK
101: VTGQIRRFIH VSTDEVYGET DEDASVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKL IPKFILLAMS GKPLPIHGDG
201: SNVRSYLYCE DVAEAFEVVL HKGEVNHVYN IGTTKERRVI DVANDISKLF GINPDSTIQF VENRPFNDQR YFLDDQKLKK LGWAERTTWE EGLKKTMEWY
301: TANPEWWGDV SGALLPHPRM LMMPGDRLCD SGDEHKDADG NQTFTVVTPP KTGGSGDNKT SLKFLIYGKT GWLGGLLGKL CEKQGIAYEY GKGRLEDRAS
401: LVADIRRVKP THVFNAAGLT GRPNVDWCES HKTETIRVNV AGTLTLADVC RENGLLMMNF ATGCIFEYDA AHPEGSGIGF KEEDKPNFTG SFYSKTKAMV
501: EELLREFDNV CTLRVRMPIS SDLNNPRNFI TKISRYNKVV NIPNSMTILD ELLPISIEMA KRNLKGIWNF TNPGVVSHNE ILEMYKSYIE PGFKWSNFTL
601: EEQAKVIVAP RSNNEMDGAK LSKEFPELLS IKDSLIKYVF EPNKRT

Best Arabidopsis Sequence Match ( AT3G14790.2 )
(BLAST)

001: MLQMATYKPK NILITGAAGF IASHVANRLV RSYPDYKIVV LDKLDYCSNL KNLNPSKSSP NFKFVKGDIA SADLVNYLLI TEEIDTIMHF AAQTHVDNSF
101: GNSFEFTKNN IYGTHVLLEA CKVTGQIRRF IHVSTDEVYG ETDEDASVGN HEASQLLPTN PYSATKAGAE MLVMAYGRSY GLPVITTRGN NVYGPNQFPE
201: KLIPKFILLA MNGKPLPIHG DGSNVRSYLY CEDVAEAFEV VLHKGEVNHV YNIGTTRERR VIDVANDISK LFGIDPDSTI QYVENRPFND QRYFLDDQKL
301: KKLGWCERTN WEEGLRKTME WYTENPEWWG DVSGALLPHP RMLMMPGDRH SDGSDEHKNA DGNQTFTVVT PTKAGCSGDK RSLKFLIYGK TGWLGGLLGK
401: LCEKQGIPYE YGKGRLEDRA SLIADIRSIK PSHVFNAAGL TGRPNVDWCE SHKTETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD AAHPEGSGIG
501: FKEEDKPNFT GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VNIPNSMTIL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKSYI EPDFKWSNFN LEEQAKVIVA PRSNNEMDGA KLSKEFPEML SIKDSLIKYV FEPNKRT

Arabidopsis Description

RHM3Rhamnose biosynthesis 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.