CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	CDX90725	AT4G09570.1	19130088
AT3G23820.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014987.1-P	Field mustard	endoplasmic reticulum	100.0	99.78
CDX85133	Canola	endoplasmic reticulum	99.56	98.9
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	96.47	95.0
CDX92990	Canola	endoplasmic reticulum	95.58	94.96
CDY64583	Canola	endoplasmic reticulum	96.25	94.78
CDY53207	Canola	endoplasmic reticulum	95.14	94.73
AT3G23820.1	Thale cress	endoplasmic reticulum	94.7	93.26
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	79.47	79.82
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	75.94	76.79
KRH58854	Soybean	endoplasmic reticulum, golgi	70.2	76.44
Solyc09g092330.1.1	Tomato	nucleus	75.72	75.89
KRH31569	Soybean	mitochondrion	77.26	75.76
KRG97348	Soybean	endoplasmic reticulum	72.85	75.17
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	74.39	74.23
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	70.2	73.27
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	68.43	71.59
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	65.78	68.51
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	65.56	68.28
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	65.78	67.27
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	65.56	67.04
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	63.36	66.74
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	62.69	66.2
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	64.46	65.77
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	62.25	65.73
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	62.69	65.44
KRH42756	Soybean	extracellular, golgi, plastid	71.08	65.31
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	62.69	65.29
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	60.93	64.34
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	60.93	64.34
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	60.71	63.95
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	60.49	63.72
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	66.0	61.65
Zm00001d049804_P001	Maize	plasma membrane	60.49	61.16
Os08t0526100-01	Rice	plastid	63.13	59.83
Zm00001d021026_P001	Maize	endoplasmic reticulum	63.8	59.34
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	62.69	59.29
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	62.25	59.0
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	64.24	58.91
Os09t0504000-01	Rice	cytosol, endoplasmic reticulum, golgi	64.46	58.63
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	62.25	58.63
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	58.06	58.44
TraesCS7B01G153900.1	Wheat	plastid	63.36	58.33
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	62.03	58.3
TraesCS7D01G257800.1	Wheat	plastid	62.91	58.16
TraesCS7A01G256600.1	Wheat	plastid	62.91	58.16
HORVU7Hr1G053260.2	Barley	plastid	62.69	57.96
HORVU5Hr1G075660.1	Barley	plastid	62.47	55.71
CDY47611	Canola	golgi	20.97	27.3
CDY47846	Canola	golgi	20.53	27.11
CDY40862	Canola	cytosol, golgi	20.75	27.09
CDX86828	Canola	golgi	20.75	27.09
CDY03506	Canola	cytosol, golgi	20.75	27.01
CDY21065	Canola	cytosol	20.75	26.78
CDY31278	Canola	cytosol	20.75	26.78
CDY08378	Canola	golgi	20.31	26.67
CDY69000	Canola	cytosol	19.43	26.27
CDY49193	Canola	cytosol	20.31	26.21
CDY47346	Canola	cytosol	20.31	26.21
CDY50431	Canola	cytosol	19.65	25.57
CDY09555	Canola	mitochondrion	21.19	22.86
CDY02312	Canola	mitochondrion	20.75	22.38
CDY49498	Canola	golgi	20.31	22.33
CDY49015	Canola	golgi	20.09	22.09
CDX82768	Canola	mitochondrion	19.87	21.9
CDX78998	Canola	mitochondrion	19.87	21.9
CDY13102	Canola	golgi	19.87	21.84
CDY29113	Canola	golgi	19.87	21.84
CDY52524	Canola	golgi	19.43	20.75
CDY31644	Canola	golgi	19.43	20.75
CDY71965	Canola	cytosol, mitochondrion	10.6	20.17
CDY25850	Canola	cytosol, mitochondrion, peroxisome	18.32	19.39
CDY60264	Canola	plastid	21.41	15.88
CDY49495	Canola	cytosol	3.09	14.29
CDY60210	Canola	cytosol, mitochondrion, peroxisome	20.75	14.07
CDY32340	Canola	cytosol, mitochondrion, peroxisome	19.87	14.0
CDY24092	Canola	cytosol, mitochondrion, peroxisome	20.53	13.98
CDY45116	Canola	cytosol, mitochondrion, peroxisome	20.53	13.98
CDY20084	Canola	cytosol, mitochondrion, peroxisome	19.65	13.82
CDX98494	Canola	cytosol, mitochondrion, plastid	19.65	13.78
CDX97601	Canola	cytosol, mitochondrion, plastid	19.65	13.78
CDY40003	Canola	cytosol, mitochondrion, plastid	20.09	13.58
CDY35137	Canola	cytosol, mitochondrion, plastid	20.09	13.58
CDX88455	Canola	cytosol, peroxisome, plastid	20.75	13.3
CDY72469	Canola	cytosol	2.21	7.58
CDX81794	Canola	plastid	5.74	7.49
CDY57072	Canola	cytosol, extracellular, peroxisome	4.86	6.81
CDY71423	Canola	cytosol, nucleus	6.4	6.73
CDY45969	Canola	cytosol	3.75	5.72
CDY45471	Canola	cytosol	3.75	5.72
CDX98052	Canola	cytosol	3.75	5.26

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:A0A078CJX0	EnsemblPlants:CDX77481	ProteinID:CDX77481
ProteinID:CDX77481.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662	EnsemblPlantsGene:GSBRNA2T00128349001	InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF19	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0004EDB578	SEG:seg	:	:	:

Description

BnaA07g06190D

Coordinates

chrLK031811:-:1029544..1031263

Molecular Weight (calculated)

50124.9 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.272

Length

453 amino acids

Sequence
(BLAST)

001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LKASSKVLFR ATLLIALVLV LLFAVNYHPH SDSHHLHRRS FLSTGLFSSS SSLGEGAAWE KRVRQSSTAK
101: RQHGLSVLVT GAAGFVGSHC SIALRKRGDG VLGFDNFNDY YDPSLKRARQ HLLEKNQVFI VEGDLNDGPL LRKLFDIVPF THVLHLAAQA GVRYAMKNPQ
201: SYISSNIAGL VNLLEVAKAA NPQPAIVWAS SSSVYGLNTE NPFSEEHRTD QPASLYAATK KAGEEIAHTY NHIYGLSLTG LRFFTVYGPW GRPDMAYFFF
301: TKDILHGKSI DIYRTQDNQE VARDFTYIDD IVKGCVGALD TAEKSTGSGG KKRGPAQLRV YNLGNTSPVP VGRLVSILEG LLGTKAKKHL IKMPRNGDVP
401: YTHANVSLAY RDFGYKPTTD LAAGLRKFVK WYVSYYGIQP RVKKENSHAD ESA

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.