Factsheet for TraesCS5B01G280700.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, golgi, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	96.65	96.05
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	96.23	95.44
HORVU5Hr1G075660.1	Barley	plastid	95.4	89.76
Zm00001d021026_P001	Maize	endoplasmic reticulum	84.1	82.55
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	85.15	82.39
Os09t0504000-01	Rice	cytosol, endoplasmic reticulum, golgi	83.47	80.12
TraesCS7B01G153900.1	Wheat	plastid	80.75	78.46
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	62.55	67.49
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	61.72	66.59
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	60.46	65.09
KRH58854	Soybean	endoplasmic reticulum, golgi	55.44	63.7
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	59.83	63.41
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	58.79	62.72
Solyc09g092330.1.1	Tomato	nucleus	59.2	62.61
CDX77481	Canola	endoplasmic reticulum	59.0	62.25
Bra014987.1-P	Field mustard	endoplasmic reticulum	59.0	62.11
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	59.0	61.84
CDX85133	Canola	endoplasmic reticulum	59.0	61.84
CDY64583	Canola	endoplasmic reticulum	59.41	61.74
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	59.41	61.74
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	59.41	61.74
CDX92990	Canola	endoplasmic reticulum	58.79	61.62
CDY53207	Canola	endoplasmic reticulum	58.58	61.54
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	55.86	61.52
AT3G23820.1	Thale cress	endoplasmic reticulum	59.0	61.3
KRG97348	Soybean	endoplasmic reticulum	56.28	61.28
KRH31569	Soybean	mitochondrion	59.0	61.04
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	57.74	60.79
TraesCS6B01G385900.1	Wheat	plastid	55.65	60.73
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	61.51	60.62
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	54.18	59.82
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	54.18	58.47
TraesCS4B01G223700.1	Wheat	plastid	55.65	54.18
KRH42756	Soybean	extracellular, golgi, plastid	55.65	53.96
TraesCS1B01G478400.1	Wheat	endoplasmic reticulum, golgi	17.36	23.45
TraesCS5B01G315700.1	Wheat	cytosol	17.99	23.37
TraesCS5B01G181300.1	Wheat	plastid	17.15	21.87
TraesCS1B01G327200.1	Wheat	peroxisome	16.32	21.2
TraesCS7B01G210700.2	Wheat	golgi	18.2	21.07
TraesCS2B01G482000.1	Wheat	golgi	17.99	20.87
TraesCS5B01G290300.1	Wheat	mitochondrion	17.99	20.43
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	18.62	13.34
TraesCS4B01G205100.3	Wheat	mitochondrion	18.83	13.2
TraesCS6B01G267600.1	Wheat	peroxisome	2.93	4.67

Protein Annotations

EnsemblPlants:TraesCS5B01G280700.1	EnsemblPlantsGene:TraesCS5B01G280700	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662
InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PANTHER:PTHR43574	PANTHER:PTHR43574:SF7	PFAM:PF01370
PRINTS:PR01713	SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	MapMan:3.13.4.1	:

Description

No Description!

Coordinates

chr5B:-:466332575..466334011

Molecular Weight (calculated)

50790.5 Da

IEP (calculated)

10.298

GRAVY (calculated)

-0.043

Length

478 amino acids

Sequence
(BLAST)

001: MPSDAAAKGV KLERYASGGA LLLRRVASGK FVSASSHLLF RATVLATLAL VFLFALHYPS LLSRSFSLAS ADGASSSSSS APSRSHRSLL ASSSAAATYG
101: SERWQKEIRR SAKPRRDGGL SVLVTGAGGF VGAHCSLALK ARGDGVVGLD NFNSYYDPAL KRGRQALLAD RGVVVLDADI NDALLLEKLF EAVPFTHVLH
201: LAAQAGVRYA MEAPQTYVAS NVAGLVSVFE AAAKHADPQP AVVWASSSSV YGLNTDAPFS EDHRTDRPAS LYAATKKAGE AIAHAYNHIY GLSITGLRFF
301: TVYGPWGRPD MAYFSFARSI VAGEPITLYA DARRDFTYID DVVKGCVGAL DTAGRSTGSA RSGKKSGPAP LRVYNLGNTS PVPVTRMVAI LEKLLGKKAN
401: KRIIAMPSNG DVPFTHANVS HAAHDFGYRP TTSLDAGLRH FVDWFVQYYK LDIKIAKPAA SKKPAATKKK TSATSASS

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.