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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • endoplasmic reticulum 2
  • golgi 3
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, golgi
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi
PProwler:secretory
WoLF PSORT:cytosol
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G23820.1 PGSC0003DMT400002331 AT4G09570.1 19130088
AT3G23820.1 PGSC0003DMT400067082 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g053790.1.1 Tomato cytosol, endoplasmic reticulum, golgi 92.86 93.07
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 80.88 78.35
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 77.88 74.45
VIT_05s0029g00420.t01 Wine grape endoplasmic reticulum 75.58 72.73
CDX77481 Canola endoplasmic reticulum 73.27 70.2
Bra014987.1-P Field mustard endoplasmic reticulum 73.27 70.04
CDX85133 Canola endoplasmic reticulum 73.27 69.74
KRH58854 Soybean endoplasmic reticulum, golgi 66.82 69.71
PGSC0003DMT400059215 Potato plastid 35.71 69.51
Bra028348.1-P Field mustard endoplasmic reticulum, golgi, nucleus 73.27 69.13
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 73.27 69.13
CDY64583 Canola endoplasmic reticulum 73.27 69.13
AT3G23820.1 Thale cress endoplasmic reticulum 73.04 68.91
KRH31569 Soybean mitochondrion 73.27 68.83
Bra001923.1-P Field mustard cytosol, endoplasmic reticulum, golgi 71.89 68.42
KRG97348 Soybean endoplasmic reticulum 69.12 68.34
CDX92990 Canola endoplasmic reticulum 71.66 68.2
CDY53207 Canola endoplasmic reticulum 71.43 68.13
PGSC0003DMT400059216 Potato cytosol 22.58 65.33
PGSC0003DMT400029181 Potato cytosol, golgi, peroxisome 63.36 64.71
GSMUA_AchrUn_... Banana endoplasmic reticulum 65.44 64.11
GSMUA_Achr8P00950_001 Banana cytosol, endoplasmic reticulum, golgi 64.98 63.66
PGSC0003DMT400020223 Potato endoplasmic reticulum 62.44 62.88
PGSC0003DMT400024810 Potato cytosol, endoplasmic reticulum, golgi, plastid 62.9 62.76
PGSC0003DMT400066897 Potato endoplasmic reticulum, golgi, mitochondrion, plastid 62.21 62.65
GSMUA_Achr8P08790_001 Banana endoplasmic reticulum, nucleus, peroxisome 63.59 62.16
PGSC0003DMT400018060 Potato cytosol, endoplasmic reticulum, golgi, plastid 62.21 62.07
PGSC0003DMT400010106 Potato cytosol, endoplasmic reticulum, golgi, plastid 61.06 59.42
KRH42756 Soybean extracellular, golgi, plastid 67.28 59.23
GSMUA_Achr7P02740_001 Banana endoplasmic reticulum 64.98 58.14
Os08t0526100-01 Rice plastid 62.21 56.49
Zm00001d049804_P001 Maize plasma membrane 58.06 56.25
TraesCS5B01G280700.1 Wheat endoplasmic reticulum 61.52 55.86
Zm00001d021026_P001 Maize endoplasmic reticulum 62.67 55.85
TraesCS5D01G288700.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 61.52 55.51
EER99141 Sorghum cytosol, endoplasmic reticulum, golgi, plastid 63.13 55.47
TraesCS5A01G281600.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 61.52 55.39
Zm00001d031577_P001 Maize cytosol, endoplasmic reticulum, peroxisome, plastid 57.14 55.11
TraesCS7D01G257800.1 Wheat plastid 62.21 55.1
TraesCS7B01G153900.1 Wheat plastid 62.44 55.08
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 63.13 55.02
HORVU7Hr1G053260.2 Barley plastid 61.98 54.9
TraesCS7A01G256600.1 Wheat plastid 61.98 54.9
EES14210 Sorghum cytosol, extracellular, golgi, plastid 60.37 54.7
HORVU5Hr1G075660.1 Barley plastid 61.75 52.76
PGSC0003DMT400012829 Potato cytosol, extracellular, golgi 22.12 27.59
PGSC0003DMT400031994 Potato golgi 21.43 26.5
PGSC0003DMT400007898 Potato cytosol 21.2 26.21
PGSC0003DMT400080637 Potato golgi 21.89 23.75
PGSC0003DMT400041159 Potato golgi, mitochondrion 20.51 22.94
PGSC0003DMT400054459 Potato mitochondrion 21.2 22.06
PGSC0003DMT400018192 Potato cytosol, mitochondrion, plastid 20.74 13.35
PGSC0003DMT400075973 Potato cytosol, mitochondrion, peroxisome 20.05 13.3
PGSC0003DMT400054754 Potato cytosol, mitochondrion, plastid 20.51 13.2
PGSC0003DMT400058533 Potato cytosol 2.53 3.65
Protein Annotations
EntrezGene:102581178MapMan:3.13.4.1Gene3D:3.40.50.720Gene3D:3.90.25.10InterPro:Epimerase_deHydtaseGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016020GO:GO:0016021GO:GO:0016857GO:GO:0050662UniProt:M1BAA7InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epimPFAM:PF01370EnsemblPlantsGene:PGSC0003DMG400015746PGSC:PGSC0003DMG400015746EnsemblPlants:PGSC0003DMT400040718PRINTS:PR01713
PANTHER:PTHR43574PANTHER:PTHR43574:SF10SUPFAM:SSF51735TMHMM:TMhelixUniParc:UPI000294E3F5RefSeq:XP_006365466.1
Description
NAD dependent epimerase [Source:PGSC_GENE;Acc:PGSC0003DMG400015746]
Coordinates
chr5:-:49203234..49204538
Molecular Weight (calculated)
48313.3 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.135
Length
434 amino acids
Sequence
(BLAST)
001: MASLFSVDTN KSTKLDRYNT YIRKVNSSTK FIAASSKLLY RITILIFALL ICSFIINYFL FVSNNSNQHG RRLFSFGGGA GWEKKVRHSS IPKKINGKVV
101: LVTGAAGFVG SHCALALKKR GDGVIGIDNF NSYYDPSLKR ARQELLAKHE IFIVEGDIND IDLVNKLFDI VPFTHVLHLA AQAGVRYAME NPLSYIHSNV
201: NGFVNLLEIA KSANPQPAIV WASSSSVYGL NTKVPFSEND RTDQPASLYA ATKKAGEEIA HTYNHIYGLS LTGLRFFTVY GPWGRPDMAY FFFTKDMIQG
301: KPIKVYVSDK EVARDFTYID DVVKGCLGAI DTAEKSTGSG GKKRGPAQLR VYNLGNTSPV SVKKLVAILE NLLNIKAKKN LIRMPQNGDV PFTHANVSLA
401: YRDFGYRPTT NLSSGLRKFV KWYLSYYGMQ ARTK
Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.