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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • endoplasmic reticulum 2
  • golgi 3
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, golgi
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi
PProwler:secretory
WoLF PSORT:cytosol
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92990 Canola endoplasmic reticulum 99.56 99.56
CDY53207 Canola endoplasmic reticulum 98.9 99.12
Bra014987.1-P Field mustard endoplasmic reticulum 94.74 95.15
Bra028348.1-P Field mustard endoplasmic reticulum, golgi, nucleus 95.18 94.35
AT3G23820.1 Thale cress endoplasmic reticulum 94.52 93.7
VIT_05s0029g00420.t01 Wine grape endoplasmic reticulum 77.85 78.71
KRH58854 Soybean endoplasmic reticulum, golgi 69.96 76.68
KRH31569 Soybean mitochondrion 77.19 76.19
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 74.78 76.12
KRG97348 Soybean endoplasmic reticulum 73.03 75.85
Solyc09g092330.1.1 Tomato nucleus 74.56 75.22
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 73.25 73.57
PGSC0003DMT400040718 Potato cytosol, endoplasmic reticulum, golgi 68.42 71.89
Solyc05g053790.1.1 Tomato cytosol, endoplasmic reticulum, golgi 66.67 70.21
Bra000385.1-P Field mustard cytosol, endoplasmic reticulum, golgi, plastid 64.91 68.05
GSMUA_Achr8P00950_001 Banana cytosol, endoplasmic reticulum, golgi 65.13 67.04
GSMUA_AchrUn_... Banana endoplasmic reticulum 64.91 66.82
Bra037315.1-P Field mustard endoplasmic reticulum, golgi, mitochondrion, plastid 62.94 66.74
Bra033116.1-P Field mustard cytosol, endoplasmic reticulum, golgi 61.84 65.73
GSMUA_Achr8P08790_001 Banana endoplasmic reticulum, nucleus, peroxisome 63.82 65.54
Bra029444.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 62.06 65.06
KRH42756 Soybean extracellular, golgi, plastid 69.74 64.5
Bra011194.1-P Field mustard cytosol, endoplasmic reticulum, golgi, plastid 59.87 63.64
Bra024075.1-P Field mustard cytosol, endoplasmic reticulum, golgi, plastid 58.77 62.33
GSMUA_Achr7P02740_001 Banana endoplasmic reticulum 65.35 61.44
Zm00001d049804_P001 Maize plasma membrane 59.65 60.71
TraesCS5B01G280700.1 Wheat endoplasmic reticulum 61.84 59.0
Os08t0526100-01 Rice plastid 61.62 58.79
EES14210 Sorghum cytosol, extracellular, golgi, plastid 61.62 58.66
TraesCS5D01G288700.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 61.62 58.42
Zm00001d021026_P001 Maize endoplasmic reticulum 62.28 58.32
EER99141 Sorghum cytosol, endoplasmic reticulum, golgi, plastid 62.94 58.1
TraesCS5A01G281600.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 61.18 57.88
TraesCS7B01G153900.1 Wheat plastid 62.28 57.72
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 62.94 57.63
Zm00001d031577_P001 Maize cytosol, endoplasmic reticulum, peroxisome, plastid 56.8 57.56
TraesCS7A01G256600.1 Wheat plastid 61.84 57.55
TraesCS7D01G257800.1 Wheat plastid 61.84 57.55
HORVU7Hr1G053260.2 Barley plastid 61.4 57.14
HORVU5Hr1G075660.1 Barley plastid 61.62 55.31
Bra035262.1-P Field mustard golgi 20.83 27.38
Bra013744.1-P Field mustard cytosol, golgi 20.83 27.3
Bra027732.1-P Field mustard golgi 20.39 27.11
Bra016757.1-P Field mustard cytosol 20.83 27.07
Bra019257.1-P Field mustard plastid 20.61 27.01
Bra019785.1-P Field mustard cytosol 19.52 26.57
Bra027626.1-P Field mustard cytosol 20.39 26.5
Bra039253.1-P Field mustard cytosol 19.74 25.94
Bra027557.1-P Field mustard golgi 20.61 22.82
Bra032409.1-P Field mustard mitochondrion 20.83 22.67
Bra020917.1-P Field mustard golgi, mitochondrion 20.18 22.38
Bra033746.1-P Field mustard golgi 19.96 22.09
Bra030933.1-P Field mustard cytosol 8.11 20.0
Bra013466.1-P Field mustard mitochondrion 19.96 19.65
Bra005387.1-P Field mustard golgi, mitochondrion 19.52 19.6
Bra027310.1-P Field mustard cytosol, mitochondrion, peroxisome 20.39 13.98
Bra038127.1-P Field mustard cytosol, mitochondrion, peroxisome 20.39 13.92
Bra039675.1-P Field mustard cytosol, mitochondrion, peroxisome 20.18 13.83
Bra035048.1-P Field mustard cytosol, mitochondrion, plastid 20.18 13.73
Bra026009.1-P Field mustard cytosol, mitochondrion, plastid 20.18 13.69
Bra021578.1-P Field mustard cytosol, mitochondrion, plastid 19.08 13.51
Bra019776.1-P Field mustard cytosol 3.73 5.3
Bra027005.1-P Field mustard cytosol 3.29 5.05
Protein Annotations
MapMan:3.13.4.1Gene3D:3.40.50.720Gene3D:3.90.25.10EnsemblPlantsGene:Bra001923EnsemblPlants:Bra001923.1EnsemblPlants:Bra001923.1-P
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016020GO:GO:0016021GO:GO:0016857UniProt:M4CCJ3InterPro:NAD(P)-bd_domInterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epimPFAM:PF16363PRINTS:PR01713PANTHER:PTHR43574PANTHER:PTHR43574:SF19SUPFAM:SSF51735
TMHMM:TMhelixUniParc:UPI00025407ADSEG:seg:::
Description
AT3G23820 (E=1e-235) GAE6 | GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); UDP-glucuronate 4-epimerase/ catalytic
Coordinates
chrA03:+:19366885..19368255
Molecular Weight (calculated)
50272.0 Da
IEP (calculated)
10.209
GRAVY (calculated)
-0.264
Length
456 amino acids
Sequence
(BLAST)
001: MPPSATAADT SKTVKLERYN SYLRKIHSTK VLNASSKVLF RATLLVALVL LLLFAFNYHP LSDSRAAASH HLHRRSFLST GIFSSSSSSS AWEKRVRQSS
101: TAKRQHGLSV LVTGAAGFVG SHCSIALRKR GDGVLGFDNF NDYYDTSLKR ARQNLLEKQQ VFIVEGDLND GPLLRKLFDI VPFTHVLHLA AQAGVRYAMK
201: NPQSYISSNI AGLVNLLEVA KAANPQPAIV WASSSSVYGL NTENPFSEEH RTDQPASLYA ATKKAGEEIA HTYNHIYGLS LTGLRFFTVY GPWGRPDMAY
301: FFFTKAILHG KSIDIYRTQD NQEVARDFTY IDDIVKGCVG ALDTAEKSTG SGGKKRGPAQ LRVYNLGNTS PVPVGRLVSI LEGLLGTKAK KHLIKMPRNG
401: DVPFTHANVS LAYRDFGYKP TTDLATGLRK FVKWYVGYYG IQPRGKKENS HADDSA
Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.