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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, golgi, plastid
Any Predictor:cytosol, endoplasmic reticulum, golgi, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:cytosol
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G23820.1 TraesCS4A01G206200.2 AT4G09570.1 19130088
AT3G23820.1 TraesCS4B01G109800.2 AT4G09570.1 19130088
AT3G23820.1 TraesCS4D01G107200.1 AT4G09570.1 19130088
AT3G23820.1 TraesCS5A01G107900.1 AT4G09570.1 19130088
AT3G23820.1 TraesCS5B01G115400.1 AT4G09570.1 19130088
AT3G23820.1 TraesCS5D01G122800.1 AT4G09570.1 19130088
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G281600.1 Wheat cytosol, endoplasmic reticulum, golgi, plastid 97.71 97.51
TraesCS5B01G280700.1 Wheat endoplasmic reticulum 96.05 96.65
HORVU5Hr1G075660.1 Barley plastid 93.35 88.39
Zm00001d021026_P001 Maize endoplasmic reticulum 83.37 82.34
EER99141 Sorghum cytosol, endoplasmic reticulum, golgi, plastid 84.2 81.98
Os09t0504000-01 Rice cytosol, endoplasmic reticulum, golgi 82.54 79.72
TraesCS7D01G257800.1 Wheat plastid 79.21 77.76
GSMUA_Achr8P00950_001 Banana cytosol, endoplasmic reticulum, golgi 61.95 67.27
GSMUA_AchrUn_... Banana endoplasmic reticulum 61.33 66.59
GSMUA_Achr8P08790_001 Banana endoplasmic reticulum, nucleus, peroxisome 60.29 65.32
KRH58854 Soybean endoplasmic reticulum, golgi 54.89 63.46
VIT_05s0029g00420.t01 Wine grape endoplasmic reticulum 58.84 62.75
PGSC0003DMT400053071 Potato cytosol, endoplasmic reticulum, golgi, plastid 58.42 62.72
Solyc09g092330.1.1 Tomato nucleus 58.84 62.61
CDX77481 Canola endoplasmic reticulum 58.63 62.25
Bra014987.1-P Field mustard endoplasmic reticulum 58.63 62.11
CDX85133 Canola endoplasmic reticulum 58.63 61.84
Bra001923.1-P Field mustard cytosol, endoplasmic reticulum, golgi 58.42 61.62
Bra028348.1-P Field mustard endoplasmic reticulum, golgi, nucleus 58.84 61.52
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 58.84 61.52
CDY64583 Canola endoplasmic reticulum 58.84 61.52
PGSC0003DMT400040718 Potato cytosol, endoplasmic reticulum, golgi 55.51 61.52
CDX92990 Canola endoplasmic reticulum 58.21 61.4
CDY53207 Canola endoplasmic reticulum 58.0 61.32
KRG97348 Soybean endoplasmic reticulum 55.93 61.28
AT3G23820.1 Thale cress endoplasmic reticulum 58.42 61.09
KRH31569 Soybean mitochondrion 58.21 60.61
PGSC0003DMT400011867 Potato cytosol, endoplasmic reticulum, golgi 57.17 60.57
GSMUA_Achr7P02740_001 Banana endoplasmic reticulum 60.91 60.41
TraesCS6D01G335600.1 Wheat plastid 54.68 60.05
Solyc05g053790.1.1 Tomato cytosol, endoplasmic reticulum, golgi 53.85 59.82
TraesCS7D01G154100.1 Wheat golgi 53.43 59.35
TraesCS4D01G224000.1 Wheat plastid 55.09 54.98
KRH42756 Soybean extracellular, golgi, plastid 55.09 53.75
TraesCS1D01G451900.1 Wheat endoplasmic reticulum, golgi 17.05 23.16
TraesCS5D01G321100.1 Wheat cytosol 17.67 23.04
TraesCS5D01G188200.1 Wheat plastid 16.63 21.33
TraesCS1D01G315500.1 Wheat cytosol, mitochondrion, plastid 16.22 21.2
TraesCS7D01G307500.1 Wheat golgi, mitochondrion 17.67 20.99
TraesCS2D01G460600.1 Wheat mitochondrion, plastid 17.67 20.63
TraesCS5D01G298700.1 Wheat mitochondrion 17.67 20.19
TraesCS5D01G032700.1 Wheat cytosol, mitochondrion, plastid 18.5 13.34
TraesCS4D01G206000.1 Wheat mitochondrion 18.71 13.2
TraesCS6D01G238800.1 Wheat peroxisome 2.91 4.67
Protein Annotations
EnsemblPlants:TraesCS5D01G288700.1EnsemblPlantsGene:TraesCS5D01G288700Gene3D:3.40.50.720Gene3D:3.90.25.10GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016857GO:GO:0050662
InterPro:Epimerase_deHydtaseInterPro:NAD(P)-bd_dom_sfInterPro:Nuc_sugar_epimPANTHER:PTHR43574PANTHER:PTHR43574:SF7PFAM:PF01370
PRINTS:PR01713SEG:segSUPFAM:SSF51735TMHMM:TMhelixMapMan:3.13.4.1:
Description
No Description!
Coordinates
chr5D:-:387727824..387729269
Molecular Weight (calculated)
51074.8 Da
IEP (calculated)
10.298
GRAVY (calculated)
-0.051
Length
481 amino acids
Sequence
(BLAST)
001: MPSDAAAKGV KLERYASGGA LLLRRVASGK FVSASSHLLF RATVLATLAL VFLFALHYPS LLSRSFSLAS DGSSSSVPGA SRSHASHRSL LASTSAAATY
101: GSERWQKEIR RSAKPGRDGG LSVLVTGAGG FVGAHCSLAL KARGDGVVGL DNFNSYYDPA LKRGRQQLLA DRGVVVLDAD INDALLLEKL FEAVPFTHVL
201: HLAAQAGVRY AMEAPQTYVA SNVAGLVSVF EAAAKRADPQ PAVVWASSSS VYGLNTDAPF SEDHRTDRPA SLYAATKKAG EAIAHAYNHI YGLSITGLRF
301: FTVYGPWGRP DMAYFSFARS IVAGEPITLY ADARRDFTYI DDVVKGCVGA LDTAGRSTGS ARSGKKSGPA PLRVYNLGNT SPVPVTRMVA ILEKLLGKKA
401: NKRIIAMPSN GDVPFTHANV SHAAHDFGYR PTTSLDAGLR HFVDWFVQYY KLDIKIAKPS TTGKKPAAAT KKKASATSAS S
Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.