Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G327200.1 | Wheat | peroxisome | 97.55 | 97.55 |
| TraesCS1A01G315300.1 | Wheat | cytosol, mitochondrion, plastid | 96.74 | 96.74 |
| TraesCS4D01G206000.1 | Wheat | mitochondrion | 75.82 | 40.91 |
| TraesCS5D01G032700.1 | Wheat | cytosol, mitochondrion, plastid | 72.55 | 40.03 |
| Os05t0203400-00 | Rice | plastid | 25.54 | 28.14 |
| TraesCS1D01G451900.1 | Wheat | endoplasmic reticulum, golgi | 19.57 | 20.34 |
| TraesCS5D01G188200.1 | Wheat | plastid | 19.57 | 19.2 |
| TraesCS7D01G307500.1 | Wheat | golgi, mitochondrion | 20.65 | 18.77 |
| TraesCS5D01G298700.1 | Wheat | mitochondrion | 21.47 | 18.76 |
| TraesCS5D01G321100.1 | Wheat | cytosol | 18.75 | 18.7 |
| TraesCS2D01G460600.1 | Wheat | mitochondrion, plastid | 20.11 | 17.96 |
| TraesCS6D01G335600.1 | Wheat | plastid | 20.65 | 17.35 |
| TraesCS7D01G154100.1 | Wheat | golgi | 20.38 | 17.32 |
| TraesCS7D01G257800.1 | Wheat | plastid | 22.01 | 16.53 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 21.2 | 16.22 |
| TraesCS4D01G224000.1 | Wheat | plastid | 21.2 | 16.18 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 3.53 | 4.33 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G315500.1 | EnsemblPlantsGene:TraesCS1D01G315500 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| PANTHER:PTHR43000 | PANTHER:PTHR43000:SF8 | PFAM:PF16363 | SUPFAM:SSF51735 | TIGR:cd05246 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1D:-:410601499..410602605
Molecular Weight (calculated)
41212.7 Da
IEP (calculated)
6.677
GRAVY (calculated)
-0.300
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MATYEPKNIL ITGAAGFIAS HVANRLVRNY PRYNIVILDR VDYCSSLRNL DPSRGSPNFK FVRGDIASAD LVNHLLVTES IDTVMHFAAQ THVDNSFSSS
101: FEFTKNNVYG THVLLEACKQ VKIRRFIHVS TDEVYGETDL NAVVGNHEES RLLPTNPYSA TKAGAEMLVM AYARSYNLPV ITTRGNNVYG PNQFPEKLVP
201: KFALLAMRGL PLPVYGNGSN ARSYLYCEDV AEAFDVVLHI GEVGHVYNIA AAKERGVVDV ARDICEILGV DPEKAIRFVE DRPFNDQRYF VDGEKMRRLG
301: WSERTTWEEG LRKTVEWYAS NAGYWGDVGV ALRGQHRNWT YAASSPPADE ADEDPTLKSA RSKCRAML
101: FEFTKNNVYG THVLLEACKQ VKIRRFIHVS TDEVYGETDL NAVVGNHEES RLLPTNPYSA TKAGAEMLVM AYARSYNLPV ITTRGNNVYG PNQFPEKLVP
201: KFALLAMRGL PLPVYGNGSN ARSYLYCEDV AEAFDVVLHI GEVGHVYNIA AAKERGVVDV ARDICEILGV DPEKAIRFVE DRPFNDQRYF VDGEKMRRLG
301: WSERTTWEEG LRKTVEWYAS NAGYWGDVGV ALRGQHRNWT YAASSPPADE ADEDPTLKSA RSKCRAML
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]
SUBAcon: [peroxisome,extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.