Factsheet for TraesCS5D01G188200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G183100.1
TraesCS5A01G314800.1
TraesCS5B01G181300.1
TraesCS5B01G315700.1
TraesCS5D01G188200.1
TraesCS5D01G321100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	TraesCS5A01G314800.1	AT1G12780.1	21798944
AT4G23920.1	TraesCS5B01G315700.1	AT1G12780.1	21798944
AT4G23920.1	TraesCS5D01G321100.1	AT1G12780.1	21798944
AT4G23920.1	TraesCS5A01G183100.1	AT4G10960.1	21798944
AT4G23920.1	TraesCS5B01G181300.1	AT4G10960.1	21798944
AT4G23920.1	TraesCS5D01G188200.1	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G181300.1	Wheat	plastid	99.73	99.73
TraesCS5A01G183100.1	Wheat	plastid	99.2	99.2
HORVU5Hr1G055920.8	Barley	plastid	98.4	98.66
Os09t0323000-01	Rice	cytosol	83.73	85.09
EER98731	Sorghum	plastid	81.6	83.61
Zm00001d005598_P001	Maize	plastid	80.53	82.74
Zm00001d020093_P002	Maize	golgi	62.93	78.15
GSMUA_Achr4P02670_001	Banana	golgi	71.2	76.5
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	69.87	75.07
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	69.6	74.79
GSMUA_Achr5P09200_001	Banana	golgi	70.67	74.65
TraesCS1D01G451900.1	Wheat	endoplasmic reticulum, golgi	69.07	73.16
Bra019257.1-P	Field mustard	plastid	67.73	72.99
AT4G23920.1	Thale cress	cytosol	68.0	72.86
CDY47611	Canola	golgi	67.47	72.7
AT4G10960.1	Thale cress	golgi	68.0	72.65
Bra013744.1-P	Field mustard	cytosol, golgi	67.2	72.41
CDY03506	Canola	cytosol, golgi	67.2	72.41
CDY40862	Canola	cytosol, golgi	66.67	72.05
Bra035262.1-P	Field mustard	golgi	66.4	71.76
CDX86828	Canola	golgi	66.4	71.76
CDY50431	Canola	cytosol	66.13	71.26
CDY47846	Canola	golgi	64.8	70.85
Bra027732.1-P	Field mustard	golgi	64.8	70.85
AT1G64440.1	Thale cress	cytosol, golgi	65.6	70.69
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	65.6	70.69
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	65.6	70.69
CDY08378	Canola	golgi	64.53	70.14
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	68.8	60.85
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	68.0	58.89
TraesCS5D01G321100.1	Wheat	cytosol	57.6	58.54
GSMUA_Achr9P06140_001	Banana	plastid	69.07	49.71
GSMUA_Achr6P26620_001	Banana	plastid	69.87	48.79
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	39.2	35.68
TraesCS5D01G298700.1	Wheat	mitochondrion	39.47	35.15
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	37.33	34.57
TraesCS7D01G154100.1	Wheat	golgi	23.2	20.09
TraesCS6D01G335600.1	Wheat	plastid	23.2	19.86
TraesCS1D01G315500.1	Wheat	cytosol, mitochondrion, plastid	19.2	19.57
TraesCS4D01G224000.1	Wheat	plastid	24.27	18.88
TraesCS7D01G257800.1	Wheat	plastid	23.47	17.96
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	21.33	16.63
TraesCS4D01G206000.1	Wheat	mitochondrion	22.93	12.61
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	22.4	12.59
TraesCS6D01G238800.1	Wheat	peroxisome	2.67	3.33

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF1	SUPFAM:SSF51735
TIGRFAMs:TIGR01179	EnsemblPlantsGene:TraesCS5D01G188200	EnsemblPlants:TraesCS5D01G188200.1	InterPro:UDP_G4E	TIGR:cd05247	SEG:seg

Description

No Description!

Coordinates

chr5D:-:290072072..290077608

Molecular Weight (calculated)

40477.9 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.254

Length

375 amino acids

Sequence
(BLAST)

001: MAVNGSANGS SGANGSAGPT RTVLVTGGAG YIGSHAVLQL LAAGFRAVVV DSLENSSELA VRRVAALAGD HARNLSFHKV DIRDEDALDA VFASTRFDAV
101: IHFAGLKAVG ESVQKPLFYY DHNIAGTINL LKVMAAHECK KLVFSSSAAV YGSPKNSPCT EEFPLLPHNP YGRTKLMAEE ICRDIYRSDS EWRIILLRYF
201: NPVGAHPSGY LGEDPRGVPN NLMPYVQQVA VGRRPSVTIF GNNYATKDGT GVRDYIHVLD LAEGHIAALR KLFDSSSNIG CEPYNLGTGK GTSVLEIVNA
301: FEKASGKKIP LVIGQRRPGD AEILFAGTGK AERELNWKAK YGITEMCRDQ WNWASKNPYG YGSPDSTKQN GSNSH

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.