Factsheet for GSMUA_Achr6P26620_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02670_001	Banana	golgi	53.63	82.52
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	53.26	81.95
GSMUA_Achr5P09200_001	Banana	golgi	53.63	81.13
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	52.51	80.8
GSMUA_Achr9P06140_001	Banana	plastid	76.35	78.69
AT4G10960.1	Thale cress	golgi	50.28	76.92
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	49.72	76.72
Bra019257.1-P	Field mustard	plastid	49.72	76.72
CDX86828	Canola	golgi	49.53	76.66
Bra035262.1-P	Field mustard	golgi	49.53	76.66
AT1G64440.1	Thale cress	cytosol, golgi	49.53	76.44
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	49.53	76.44
CDY47846	Canola	golgi	48.6	76.09
Bra027732.1-P	Field mustard	golgi	48.6	76.09
CDY40862	Canola	cytosol, golgi	49.16	76.08
AT4G23920.1	Thale cress	cytosol	49.35	75.71
CDY08378	Canola	golgi	48.6	75.65
CDY47611	Canola	golgi	48.79	75.29
CDY03506	Canola	cytosol, golgi	48.79	75.29
CDY50431	Canola	cytosol	48.6	75.0
Bra013744.1-P	Field mustard	cytosol, golgi	48.6	75.0
Os09t0323000-01	Rice	cytosol	49.53	72.09
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	56.8	71.93
EER98731	Sorghum	plastid	48.23	70.77
Zm00001d005598_P001	Maize	plastid	48.04	70.68
HORVU5Hr1G055920.8	Barley	plastid	49.16	70.59
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	56.8	70.44
TraesCS5A01G183100.1	Wheat	plastid	48.79	69.87
TraesCS5B01G181300.1	Wheat	plastid	48.79	69.87
TraesCS5D01G188200.1	Wheat	plastid	48.79	69.87
GSMUA_Achr1P18740_001	Banana	cytosol	45.25	68.64
GSMUA_Achr5P13620_001	Banana	cytosol	44.32	67.81
Os08t0374800-01	Rice	golgi	49.91	65.69
Zm00001d020093_P002	Maize	golgi	36.87	65.56
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	50.09	63.59
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	49.91	63.36
GSMUA_Achr11P...	Banana	cytosol, golgi	28.12	38.62
GSMUA_Achr11P...	Banana	mitochondrion	28.68	36.93
GSMUA_Achr8P33320_001	Banana	mitochondrion	28.68	36.93
GSMUA_Achr3P23390_001	Banana	mitochondrion	28.31	36.45
GSMUA_Achr4P31860_001	Banana	mitochondrion	27.93	36.06
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	15.64	20.74
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	15.64	20.29
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	15.08	20.05
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	15.08	19.52
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	15.08	18.84
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	15.46	18.74
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	15.83	18.52
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	15.27	18.51
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	16.57	18.35
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	14.53	17.57
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	11.92	16.62
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	15.64	16.44
GSMUA_Achr5P25290_001	Banana	mitochondrion	3.35	15.52
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	16.01	13.25
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	10.43	12.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.97	11.79
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	13.22	11.74
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	13.41	11.59
GSMUA_Achr4P29070_001	Banana	cytosol	0.93	7.58
GSMUA_Achr4P02550_001	Banana	mitochondrion	5.59	6.58
GSMUA_Achr1P03840_001	Banana	cytosol	1.86	3.27
GSMUA_Achr5P10430_001	Banana	cytosol	1.86	3.27
GSMUA_Achr4P29060_001	Banana	cytosol	1.3	3.2

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	GO:GO:0016857	EnsemblPlantsGene:GSMUA_Achr6G26620_001	EnsemblPlants:GSMUA_Achr6P26620_001	EnsemblPlants:GSMUA_Achr6T26620_001	UniProt:M0TAF7
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF16363	PRINTS:PR01713	PANTHER:PTHR43725
PANTHER:PTHR43725:SF5	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI000295DCD3	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr6G26620_001]

Coordinates

chr6:-:27301747..27314679

Molecular Weight (calculated)

58287.2 Da

IEP (calculated)

8.846

GRAVY (calculated)

-0.382

Length

537 amino acids

Sequence
(BLAST)

001: MAVRDHPRAY IPPSLAPGSQ LQTSVSPPLS SPTRPACLSP DLEDSAVRLR RSVDPMPSPP AVARTILVTG GAGYIGSHTV LQLLKGGFRV VVLDSLNNSS
101: EVAVERVRDL AGEFGKNLAF HRVDLRDREA LESVFSSTKF DAVIHFAGLK AVGESVKNPL LYYNNNLIGT INLFEVMAAN GCKKLVFSSS ATVYGWPKEV
201: PCTEEFPLCA MNPYGRTKLM TEDICRDICQ GDSDWDMILL RYFNPVGAHS SGYIGEDPCG IPNNLMPFVQ QVAVGRRPAL TVYGNDYSTK DGTGVRDYIH
301: VVDLADGHIA ALQKLFEGSR VGCEVYNLGT GKGTSVLEMV AAFEKASGKK IPLVMAGRRP GDAEVVYAST TKAEKELQWR AKYGIEEMCR DQWNWASKNP
401: WGYGSPETTN GNQLGYGSSE SINGSIETAN EKRSSETANG KYPTYGPFKI TNGKRTAFES PKISNGKHPA YGLVHTASWK HPTCGLSETT NGKHPTHGSP
501: KTTNGKYRIY GSPKIANGKH PTYGSLTTVN AKHVISK

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.