Factsheet for GSMUA_Achr9P00170_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 3
golgi 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	90.83	90.83
GSMUA_Achr5P09200_001	Banana	golgi	86.82	85.35
GSMUA_Achr4P02670_001	Banana	golgi	82.52	82.52
Bra019257.1-P	Field mustard	plastid	77.36	77.59
AT4G23920.1	Thale cress	cytosol	77.08	76.86
CDY47611	Canola	golgi	75.93	76.15
AT4G10960.1	Thale cress	golgi	76.5	76.07
CDY50431	Canola	cytosol	75.64	75.86
Bra013744.1-P	Field mustard	cytosol, golgi	75.64	75.86
CDY40862	Canola	cytosol, golgi	75.36	75.79
CDY03506	Canola	cytosol, golgi	75.36	75.57
Bra035262.1-P	Field mustard	golgi	75.07	75.5
CDX86828	Canola	golgi	75.07	75.5
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	74.5	74.71
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	74.5	74.71
CDY47846	Canola	golgi	73.07	74.34
Bra027732.1-P	Field mustard	golgi	73.07	74.34
CDY08378	Canola	golgi	73.07	73.91
AT1G64440.1	Thale cress	cytosol, golgi	73.64	73.85
HORVU5Hr1G055920.8	Barley	plastid	75.07	70.05
Os09t0323000-01	Rice	cytosol	73.93	69.92
TraesCS5A01G183100.1	Wheat	plastid	74.79	69.6
TraesCS5B01G181300.1	Wheat	plastid	74.79	69.6
TraesCS5D01G188200.1	Wheat	plastid	74.79	69.6
EER98731	Sorghum	plastid	71.35	68.03
Zm00001d005598_P001	Maize	plastid	71.06	67.95
GSMUA_Achr5P13620_001	Banana	cytosol	68.19	67.81
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	81.09	66.75
GSMUA_Achr1P18740_001	Banana	cytosol	67.62	66.67
Zm00001d020093_P002	Maize	golgi	55.59	64.24
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	79.66	64.2
Os08t0374800-01	Rice	golgi	74.79	63.97
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	75.36	62.17
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	75.36	62.17
GSMUA_Achr9P06140_001	Banana	plastid	80.8	54.13
GSMUA_Achr6P26620_001	Banana	plastid	80.8	52.51
GSMUA_Achr11P...	Banana	cytosol, golgi	41.55	37.08
GSMUA_Achr4P31860_001	Banana	mitochondrion	41.83	35.1
GSMUA_Achr11P...	Banana	mitochondrion	41.83	35.01
GSMUA_Achr3P23390_001	Banana	mitochondrion	41.26	34.53
GSMUA_Achr8P33320_001	Banana	mitochondrion	41.26	34.53
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	24.07	20.74
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	23.5	20.3
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	24.07	20.29
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	23.21	19.52
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	25.21	19.17
GSMUA_Achr5P25290_001	Banana	mitochondrion	6.3	18.97
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	24.07	18.96
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	23.21	18.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	23.5	18.51
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	22.92	18.02
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	23.78	17.11
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	23.78	16.24
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	17.48	15.84
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	24.64	13.25
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	15.76	11.9
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	21.2	11.64
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	20.63	11.59
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	19.77	11.4
GSMUA_Achr4P02550_001	Banana	mitochondrion	9.17	7.02
GSMUA_Achr4P29070_001	Banana	cytosol	1.15	6.06
GSMUA_Achr5P10430_001	Banana	cytosol	3.15	3.59
GSMUA_Achr4P29060_001	Banana	cytosol	1.72	2.74
GSMUA_Achr1P03840_001	Banana	cytosol	2.29	2.61

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr9G00170_001	EnsemblPlants:GSMUA_Achr9P00170_001	EnsemblPlants:GSMUA_Achr9T00170_001	UniProt:M0TW74	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF11	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI000295498F	:	:	:	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00170_001]

Coordinates

chr9:-:216640..224209

Molecular Weight (calculated)

38378.1 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.105

Length

349 amino acids

Sequence
(BLAST)

001: MGRCVLVTGG AGYVGSHTVL QLLLEGFTAV VVDNLDNSSE FAVQRVAQLA GEFGKNLTFH RIDIRDIEAL EKVFSTTKFD AVIHFAGLKA VGESVQKPLL
101: YYKNNIIGTI ALLEVMAAYG CKKLVFSSSA TVYGWPKDLP CTEESPLCAM NPYGRTKLMI EEICHDIHRA DSDWKIMLLR YFNPVGAHSS GHIGEDPRGI
201: PNNLMPLIQQ VSVGRRPTLA VFGNDYSTKD GTGVRDYIHV VDLADGHIAA LHKFFEDPNI GCEVYNLGTG NGTSVLEMVA AFEKASGKKI PLVMAGRRPG
301: DAEILYACTA KAEKELNWKA KYSIEEMCRD QWNWASKNPW GYGLPDPAN

Best Arabidopsis Sequence Match ( AT4G23920.1 )
(BLAST)

001: MAKSVLVTGG AGYIGSHTVL QLLEGGYSAV VVDNYDNSSA ASLQRVKKLA GENGNRLSFH QVDLRDRPAL EKIFSETKFD AVIHFAGLKA VGESVEKPLL
101: YYNNNIVGTV TLLEVMAQYG CKNLVFSSSA TVYGWPKEVP CTEESPISAT NPYGRTKLFI EEICRDVHRS DSEWKIILLR YFNPVGAHPS GYIGEDPLGV
201: PNNLMPYVQQ VAVGRRPHLT VFGTDYKTKD GTGVRDYIHV MDLADGHIAA LRKLDDLKIS CEVYNLGTGN GTSVLEMVAA FEKASGKKIP LVMAGRRPGD
301: AEVVYASTEK AERELNWKAK NGIEEMCRDL WNWASNNPYG YNSSSNGSSS

Arabidopsis Description

UGE2UDP-glucose 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.