Factsheet for GSMUA_Achr4P10430_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 2
golgi 1
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P03840_001
GSMUA_Achr3P31810_001
GSMUA_Achr3P31820_001
GSMUA_Achr4P10430_001
GSMUA_Achr5P10430_001
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	GSMUA_Achr1P03840_001	AT1G63000.1	21798944
AT1G78570.1	GSMUA_Achr5P10430_001	AT1G63000.1	21798944
AT1G78570.1	GSMUA_Achr10P...	AT1G78570.1	21798944
AT1G78570.1	GSMUA_Achr3P31810_001	AT1G78570.1	21798944
AT1G78570.1	GSMUA_Achr3P31820_001	AT1G78570.1	21798944
AT1G78570.1	GSMUA_Achr4P10430_001	AT1G78570.1	21798944
AT1G78570.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G78570.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G78570.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	84.75	88.57
GSMUA_Achr4P02550_001	Banana	mitochondrion	62.1	88.38
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	87.21	85.11
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	83.36	85.06
AT3G14790.2	Thale cress	mitochondrion	87.21	84.86
CDX98494	Canola	cytosol, mitochondrion, plastid	84.44	84.83
CDX97601	Canola	cytosol, mitochondrion, plastid	84.44	84.83
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	86.9	84.3
CDY32340	Canola	cytosol, mitochondrion, peroxisome	83.51	84.29
CDY20084	Canola	cytosol, mitochondrion, peroxisome	83.36	84.01
CDY40003	Canola	cytosol, mitochondrion, plastid	86.59	83.88
CDY45116	Canola	cytosol, mitochondrion, peroxisome	85.82	83.76
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	83.05	83.7
CDY24092	Canola	cytosol, mitochondrion, peroxisome	85.67	83.61
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	86.13	83.43
CDY35137	Canola	cytosol, mitochondrion, plastid	86.13	83.43
CDY60210	Canola	cytosol, mitochondrion, peroxisome	85.82	83.38
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	85.67	83.23
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	85.21	83.16
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	85.36	83.06
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	85.98	83.04
CDY25850	Canola	cytosol, mitochondrion, peroxisome	54.08	82.01
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	75.04	80.5
CDX88455	Canola	cytosol, peroxisome, plastid	86.75	79.63
GSMUA_Achr1P03840_001	Banana	cytosol	35.44	75.16
GSMUA_Achr5P10430_001	Banana	cytosol	35.44	75.16
GSMUA_Achr4P29070_001	Banana	cytosol	7.24	71.21
GSMUA_Achr4P29060_001	Banana	cytosol	20.18	59.82
GSMUA_Achr4P02670_001	Banana	golgi	14.33	26.65
GSMUA_Achr5P13620_001	Banana	cytosol	13.71	25.36
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	13.56	25.21
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	13.25	24.64
GSMUA_Achr5P09200_001	Banana	golgi	13.1	23.94
GSMUA_Achr11P...	Banana	cytosol, golgi	13.41	22.25
GSMUA_Achr1P18740_001	Banana	cytosol	12.02	22.03
GSMUA_Achr8P33320_001	Banana	mitochondrion	13.87	21.58
GSMUA_Achr11P...	Banana	mitochondrion	13.87	21.58
GSMUA_Achr3P23390_001	Banana	mitochondrion	13.56	21.1
GSMUA_Achr4P31860_001	Banana	mitochondrion	13.41	20.91
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	12.94	20.79
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	12.79	20.49
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	13.25	20.28
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	13.41	20.09
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	12.63	19.81
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	12.48	19.52
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	13.71	19.39
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	12.79	19.3
GSMUA_Achr5P25290_001	Banana	mitochondrion	3.39	18.97
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	12.94	18.96
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	12.94	18.96
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	12.94	18.92
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	13.41	17.94
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	12.94	16.44
GSMUA_Achr9P06140_001	Banana	plastid	12.94	16.12
GSMUA_Achr6P26620_001	Banana	plastid	13.25	16.01
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	9.4	15.84
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	8.32	11.69

Protein Annotations

EnsemblPlants:GSMUA_Achr4P10430_001	EnsemblPlants:GSMUA_Achr4T10430_001	EnsemblPlantsGene:GSMUA_Achr4G10430_001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8	PFAM:PF04321	PFAM:PF16363
SUPFAM:SSF51735	UniParc:UPI0002955AC6	UniProt:M0SMR0	MapMan:3.13.6.1	:	:

Description

Probable rhamnose biosynthetic enzyme 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10430_001]

Coordinates

chr4:-:7562128..7564558

Molecular Weight (calculated)

73752.4 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.363

Length

649 amino acids

Sequence
(BLAST)

001: MATYEPKNIL ITGAAGFIAS HVANRLVRNY PKYKIVVLDK LDYCSNLKNL NPSRSCPNFR FVKGDIGSAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTTNNIYG THVLLEACKV TGQVRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QPLPIHGDGS NVRSYLYCED VAEAYEVVLH KGEVGHVYNI GTKKERRVID VAVDICKLFS LDTDTVIKFV ENRPFNDQRY FLDDQKLKNL
301: GWSEKTIWEE GLKKTMEWYM NNPDWWGDVS GALLPHPRML MMPGIERHID GSEETKDMKP HLKFLIYGRT GWIGGLLGKL CEKQDIPYEY GRGRLEERSQ
401: LIRDIQNVKP SHVFNAAGVT GRPNVDWCES HKQETIRTNV VGTLTLADVC RENGLLLMNY ATGCIFEYDA RHPEGSGIGY KEEDKPNFTG SFYSKTKAMV
501: EELLKEFDNV CTLRVRMPIS SDLSNPRNFI TKISRYNKVV NIPNSMTVLD ELLPISIEMA KRSCRGIWNF TNPGVVSHNE ILEMYKSYID PSFKWTNFTL
601: EEQAKVIVAP RSNNEMDASK LKREFPELLS IKDSIIKYVF EPNKKVLSN

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.