Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 41.64 | 75.63 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 81.18 | 69.35 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 82.93 | 67.33 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 61.15 | 66.6 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 60.8 | 59.66 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 64.11 | 59.64 |
| CDX78219 | Canola | nucleus, plastid | 61.85 | 58.87 |
| CDX73496 | Canola | nucleus, plastid | 63.07 | 58.2 |
| Os11t0124300-01 | Rice | nucleus, plastid | 63.76 | 56.22 |
| Os12t0122000-01 | Rice | plastid | 64.46 | 56.06 |
| Zm00001d052380_P001 | Maize | plastid | 64.98 | 55.84 |
| TraesCS5B01G143100.1 | Wheat | plastid | 61.85 | 55.64 |
| TraesCS5A01G144000.1 | Wheat | plastid | 62.37 | 55.25 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 62.37 | 54.82 |
| TraesCS5D01G148000.1 | Wheat | plastid | 62.2 | 54.67 |
| TraesCS4B01G124000.1 | Wheat | plastid | 64.29 | 54.34 |
| TraesCS4D01G122000.1 | Wheat | plastid | 64.11 | 54.2 |
| Zm00001d005029_P001 | Maize | plastid | 62.37 | 52.8 |
| OQU82754 | Sorghum | plastid | 64.81 | 52.32 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 68.29 | 50.13 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.26 | 47.08 |
| Solyc10g074680.1.1 | Tomato | cytosol | 64.63 | 44.92 |
| PGSC0003DMT400043358 | Potato | cytosol | 64.46 | 44.79 |
| KRH40615 | Soybean | nucleus, plastid | 62.72 | 43.74 |
| KRH00551 | Soybean | nucleus, plastid | 62.89 | 42.87 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 20.03 | 32.3 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 19.69 | 30.62 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 23.69 | 30.49 |
| GSMUA_Achr8P18250_001 | Banana | cytosol | 25.09 | 30.06 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 23.69 | 28.75 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 19.16 | 28.72 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 18.82 | 28.5 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 21.78 | 28.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.29 | 27.49 |
| GSMUA_Achr10P... | Banana | cytosol | 22.47 | 26.99 |
| GSMUA_Achr10P... | Banana | nucleus | 20.21 | 26.42 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 25.09 | 24.96 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 19.86 | 24.95 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.65 | 24.3 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 21.6 | 24.03 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 25.26 | 23.62 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 25.09 | 23.57 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 23.0 | 23.53 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 24.04 | 22.62 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 24.56 | 21.69 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 24.56 | 16.36 |
| GSMUA_Achr11P... | Banana | cytosol | 23.87 | 12.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P20070_001 | EnsemblPlants:GSMUA_Achr11T20070_001 | EnsemblPlantsGene:GSMUA_Achr11G20070_001 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| ncoils:Coil | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg |
| UniParc:UPI000296B057 | UniProt:M0RTT7 | MapMan:15.5.12 | : | : | : |
Description
Protein SCARECROW [Source:GMGC_GENE;Acc:GSMUA_Achr11G20070_001]
Coordinates
chr11:-:21060607..21063242
Molecular Weight (calculated)
61520.2 Da
IEP (calculated)
6.034
GRAVY (calculated)
-0.116
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKKRLASEL DLQSGPSSYS AARLPRRGVS TGSSATPAST PPVPLPSLPA PPLPALPSPA VCGFSGLPPF PPEFDRIVLP ASSAEGLQLV SSSAGGVGGG
101: GSDDDGAGTA WVDGIIRDII SSSAGGEVSI PQIVNSVREI VHPCNPGLAA LLELRLRSLI SDPMPPPLPE SAQQRPQPPL QPQTHPQRSS NSVSSEEATA
201: ATSAAAAAAA AKEKRDELQQ RKRDEEGLHL LTLLLHCAEA VAADNLEEAN RLLLEISELS TPFGTSAQRV AAYFSEAMSA RLVSSCLGLY APLPTVPHRH
301: RLASAFQVFN GISPFVKFSH FTANQAIQEA FEREDRVHII DFDIMQGLQW PGLFHILASR PGGPPRVRLT GLGYSMEALE ATGKRLSDFA ETLGLPFEFI
401: PIAEKVGNLD PERLGVSRRE ALAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTMVEQDL SQAGSFLARF VEAIHYYSAL FDSLGASYSE DSQERHIVKF
501: SNWREKLGQS GFRGVSLAGN AAAQATLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPISHSRPP PPPL
101: GSDDDGAGTA WVDGIIRDII SSSAGGEVSI PQIVNSVREI VHPCNPGLAA LLELRLRSLI SDPMPPPLPE SAQQRPQPPL QPQTHPQRSS NSVSSEEATA
201: ATSAAAAAAA AKEKRDELQQ RKRDEEGLHL LTLLLHCAEA VAADNLEEAN RLLLEISELS TPFGTSAQRV AAYFSEAMSA RLVSSCLGLY APLPTVPHRH
301: RLASAFQVFN GISPFVKFSH FTANQAIQEA FEREDRVHII DFDIMQGLQW PGLFHILASR PGGPPRVRLT GLGYSMEALE ATGKRLSDFA ETLGLPFEFI
401: PIAEKVGNLD PERLGVSRRE ALAVHWLQHS LYDVTGSDTN TLWLLQRLAP KVVTMVEQDL SQAGSFLARF VEAIHYYSAL FDSLGASYSE DSQERHIVKF
501: SNWREKLGQS GFRGVSLAGN AAAQATLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPISHSRPP PPPL
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.