Factsheet for GSMUA_Achr6P17870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	71.52	72.67
VIT_18s0076g00200.t01	Wine grape	cytosol	43.05	58.9
KRH34954	Soybean	cytosol	50.22	55.31
KRG91825	Soybean	nucleus	53.36	51.18
KRH08555	Soybean	cytosol	53.59	50.74
KRH70202	Soybean	cytosol	53.59	50.21
PGSC0003DMT400023877	Potato	cytosol	45.96	49.76
Solyc11g017100.1.1	Tomato	cytosol	48.88	45.8
HORVU0Hr1G004640.1	Barley	mitochondrion, nucleus, plastid	45.96	42.8
TraesCS2A01G304000.1	Wheat	cytosol, mitochondrion, nucleus	45.96	42.71
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	45.96	42.18
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	45.52	41.94
OQU81603	Sorghum	cytosol	33.63	41.9
Zm00001d025133_P001	Maize	cytosol	44.62	40.28
Os04t0432100-00	Rice	nucleus	44.62	39.48
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	43.05	38.55
GSMUA_Achr1P09360_001	Banana	cytosol	24.22	29.27
GSMUA_Achr1P16230_001	Banana	cytosol	23.32	29.21
GSMUA_Achr1P19470_001	Banana	nucleus	24.44	28.46
GSMUA_AchrUn_...	Banana	cytosol	23.32	27.23
GSMUA_Achr7P16880_001	Banana	cytosol	23.09	27.18
GSMUA_Achr8P09690_001	Banana	cytosol	26.91	26.91
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	17.94	25.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	27.13	25.58
GSMUA_Achr8P01180_001	Banana	nucleus	23.54	22.98
GSMUA_Achr8P18250_001	Banana	cytosol	24.66	22.96
GSMUA_AchrUn_...	Banana	cytosol	27.35	22.8
GSMUA_Achr11P...	Banana	plastid	28.03	21.78
GSMUA_Achr3P30530_001	Banana	cytosol	28.03	21.66
GSMUA_Achr10P...	Banana	cytosol	23.09	21.55
GSMUA_Achr4P07320_001	Banana	cytosol	26.91	21.39
GSMUA_Achr1P21300_001	Banana	nucleus	23.09	19.96
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	27.13	19.8
GSMUA_Achr8P09400_001	Banana	cytosol	28.7	19.05
GSMUA_Achr6P20830_001	Banana	nucleus	25.11	18.36
GSMUA_Achr1P18840_001	Banana	cytosol	25.11	18.24
GSMUA_Achr7P05850_001	Banana	mitochondrion	26.46	18.15
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	27.35	17.26
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	26.23	13.57
GSMUA_Achr11P...	Banana	cytosol	26.46	10.71

Protein Annotations

EnsemblPlants:GSMUA_Achr6P17870_001	EnsemblPlants:GSMUA_Achr6T17870_001	EnsemblPlantsGene:GSMUA_Achr6G17870_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF19	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000294AB7E
UniProt:M0T7Y5	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 28 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17870_001]

Coordinates

chr6:+:12076505..12077845

Molecular Weight (calculated)

49004.5 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.235

Length

446 amino acids

Sequence
(BLAST)

001: MEEEGQGIGE ELLSLGLGVG STRRSNAAVG KRKAKDAEER KLLGLLQARE DMLRVDPRRS GPEDKRDQRL VHLLLAAAAA VDAGRASAAM DALVELYRHA
101: SLHGDPMQRV MAYFADGLAA RILPEASPLY QSVMAPPTAE EEFAAFTDLY RASPYFQFAH FTANQTIMEA FEAEQQHNGG RLHVIDFDVS YGFQWPSLIQ
201: SLCDKATTSS PISLRLTGFG GSTEELEETE TRLVGFCKGC SNLEFVFQGL LRGSTANDLK IDKDATLAVN LVFYLQTLKT SSEMLATLMS IRSLNPRAVV
301: VLVEKEDSRG PASFLARMVD SLNYFAAMFH SLHDCLPAES TERLSIEKNH LGREIKAAMG KSSHQEKVGG PTWKGRMGSV GYRGMKLSSR SVSQAKLLLK
401: IRSHFSSIEH VSNSGFGIAE GDDGTTISLC WQDRNLITVS AWRCSR

Best Arabidopsis Sequence Match ( AT1G63100.1 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.