Factsheet for GSMUA_Achr6P34550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, nucleus

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87235	Sorghum	extracellular	29.46	61.02
KRG92263	Soybean	cytosol	39.77	60.9
VIT_11s0016g04630.t01	Wine grape	plastid	51.23	58.83
KRH63032	Soybean	cytosol	47.46	57.65
KRH54840	Soybean	cytosol	47.3	57.23
KRH34544	Soybean	cytosol	44.84	56.15
TraesCS3A01G233000.1	Wheat	plasma membrane	44.68	54.49
Os01t0646300-01	Rice	cytosol	43.86	54.14
Zm00001d044065_P001	Maize	cytosol	41.9	53.89
TraesCS3B01G262400.1	Wheat	mitochondrion, plastid	45.66	52.74
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	44.52	50.65
HORVU3Hr1G058100.1	Barley	plastid	45.99	49.91
GSMUA_Achr8P18250_001	Banana	cytosol	36.17	46.14
GSMUA_Achr10P...	Banana	cytosol	34.37	43.93
TraesCS5A01G511900.1	Wheat	cytosol	30.28	42.43
Os05t0574900-01	Rice	plasma membrane	34.7	42.4
TraesCS4B01G342800.1	Wheat	cytosol	30.28	42.05
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	31.59	40.04
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	31.42	39.26
TraesCS1D01G421200.1	Wheat	cytosol	32.08	38.58
Zm00001d009646_P001	Maize	plastid	29.46	37.89
HORVU1Hr1G090800.1	Barley	mitochondrion	33.06	37.69
TraesCS1B01G443800.1	Wheat	cytosol	31.59	37.33
GSMUA_Achr1P21300_001	Banana	nucleus	31.26	37.02
KXG23987	Sorghum	cytosol	31.75	36.95
GSMUA_Achr1P09360_001	Banana	cytosol	19.15	31.71
GSMUA_Achr1P16230_001	Banana	cytosol	18.33	31.46
GSMUA_Achr8P09690_001	Banana	cytosol	22.42	30.72
GSMUA_Achr1P19470_001	Banana	nucleus	19.15	30.55
GSMUA_AchrUn_...	Banana	cytosol	18.99	30.37
GSMUA_Achr7P16880_001	Banana	cytosol	17.68	28.5
GSMUA_Achr8P01180_001	Banana	nucleus	21.11	28.23
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	21.44	27.7
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	13.91	27.6
GSMUA_Achr6P17870_001	Banana	cytosol	19.8	27.13
GSMUA_AchrUn_...	Banana	cytosol	22.26	25.42
GSMUA_Achr11P...	Banana	plastid	23.57	25.09
GSMUA_Achr6P20830_001	Banana	nucleus	24.88	24.92
GSMUA_Achr4P07320_001	Banana	cytosol	22.09	24.06
GSMUA_Achr10P...	Banana	nucleus	17.18	23.92
GSMUA_Achr3P30530_001	Banana	cytosol	22.59	23.92
GSMUA_Achr1P18840_001	Banana	cytosol	23.4	23.29
GSMUA_Achr7P05850_001	Banana	mitochondrion	23.9	22.46
GSMUA_Achr8P09400_001	Banana	cytosol	23.9	21.73
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	25.04	21.64
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	23.9	16.94
GSMUA_Achr11P...	Banana	cytosol	24.06	13.34

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	InterPro:DELLA_N_sf	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G34550_001
EnsemblPlants:GSMUA_Achr6P34550_001	EnsemblPlants:GSMUA_Achr6T34550_001	InterPro:IPR005202	InterPro:IPR038088	UniProt:M0TCP8	PFAM:PF03514
PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF7	SMART:SM01129	InterPro:TF_DELLA_N
InterPro:TF_GRAS	UniParc:UPI00029617E3	SEG:seg	:	:	:

Description

Putative DELLA protein GAI [Source:GMGC_GENE;Acc:GSMUA_Achr6G34550_001]

Coordinates

chr6:-:33113039..33116473

Molecular Weight (calculated)

67223.3 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.309

Length

611 amino acids

Sequence
(BLAST)

001: MKYYSESVFA YPNFFGGGGR LYWRGVRETE ISLPWRKRRE KHQKSSPMSS SFRSDMGTDP YDSVGDDRWI IASASDRGSS RGEIDSLLHG AGYRVRSTDL
101: RHVAIGLEQL ESTMVGDQCV ASSAEAIHYN PSDLTAWVDS MLSELAPDPH LLRHPLSTAA ANTWADPTQQ RPSLHRLENH HQHRNVPAVS LQSMDEEEDA
201: AIRLVHLLVS CADSVQRGDS EMAGSLLDQT RLALARVNTG FGIGKVAGYF VDALCRRLYP PPPSATGGGG SAANLEILYH HFYEACPYIK FAHFTANQAI
301: LEAFQGHDRV HVVDFNLMHG LQWPALIQAL ALRPGGPPLL RLTGIGAPSP DGRDALREVG LRLAELARSV QVRFAFRGVA ATRLEHVRPW MFQVAPGEAV
401: AVNTVLQLHR LLGDPAAEPI DTVLEWIVGL KPKIVTVVEQ EADHNKPSFL DRFTEALFYY STMFDSLEGG RGAARVERHE PLARWRDRLG RAGLRAVHLG
501: SNAFKQASML LTLFSGEGYC VEEVAGCLTL GWHSRPLISA SAWRADDADD ASPPRDHQTL VLQDHSSSIT SGSNNVVDGD DHLHQHSVMR SHMGSSDRIN
601: DTGSGSSCSR V

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.