Factsheet for VIT_11s0016g04630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92263	Soybean	cytosol	55.08	73.43
KRH54840	Soybean	cytosol	66.54	70.1
KRH63032	Soybean	cytosol	66.17	69.98
KRH34544	Soybean	cytosol	64.1	69.88
OQU87235	Sorghum	extracellular	30.64	55.25
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	58.83	51.23
TraesCS3A01G233000.1	Wheat	plasma membrane	46.99	49.9
Os01t0646300-01	Rice	cytosol	46.43	49.9
Zm00001d044065_P001	Maize	cytosol	43.98	49.26
TraesCS3B01G262400.1	Wheat	mitochondrion, plastid	46.99	47.26
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	46.8	46.37
VIT_14s0006g00640.t01	Wine grape	cytosol	47.37	44.29
HORVU3Hr1G058100.1	Barley	plastid	46.62	44.05
VIT_01s0011g05260.t01	Wine grape	cytosol	47.74	43.05
TraesCS4B01G342800.1	Wheat	cytosol	34.59	41.82
TraesCS5A01G511900.1	Wheat	cytosol	34.21	41.74
TraesCS1A01G413800.1	Wheat	cytosol, nucleus, plastid	36.09	39.83
Os05t0574900-01	Rice	plasma membrane	37.03	39.4
Zm00001d009646_P001	Maize	plastid	34.02	38.11
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	34.96	38.04
TraesCS1D01G421200.1	Wheat	cytosol	35.71	37.4
TraesCS1B01G443800.1	Wheat	cytosol	35.34	36.36
HORVU1Hr1G090800.1	Barley	mitochondrion	36.28	36.01
KXG23987	Sorghum	cytosol	34.21	34.67
VIT_18s0076g00200.t01	Wine grape	cytosol	20.49	33.44
VIT_03s0017g01660.t01	Wine grape	plastid	25.75	31.0
VIT_17s0000g10300.t01	Wine grape	nucleus	30.08	30.83
VIT_19s0015g01930.t01	Wine grape	cytosol	23.5	30.27
VIT_13s0019g01220.t01	Wine grape	cytosol	25.56	28.45
VIT_06s0009g02390.t01	Wine grape	cytosol	25.0	28.06
VIT_19s0085g00540.t01	Wine grape	cytosol	27.82	27.92
VIT_07s0005g03700.t01	Wine grape	cytosol	24.25	26.49
VIT_14s0068g01610.t01	Wine grape	plastid	32.52	25.9
VIT_02s0025g04000.t01	Wine grape	plastid	29.89	24.24
VIT_08s0056g00050.t01	Wine grape	nucleus	29.51	20.08
VIT_04s0023g01660.t01	Wine grape	cytosol	23.12	20.07

Protein Annotations

Gene3D:1.10.10.1290	EntrezGene:100249084	wikigene:100249084	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1
ProteinID:CCB51554	ProteinID:CCB51554.1	InterPro:DELLA_N_sf	UniProt:F6HH58	EMBL:FN595756	GO:GO:0000003
GO:GO:0000989	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737
GO:GO:0009791	GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987	GO:GO:0010187
GO:GO:0042538	GO:GO:0043565	GO:GO:2000033	GO:GO:2000377	InterPro:IPR005202	InterPro:IPR038088
EMBL:KY765597	EntrezGene:LOC100249084	wikigene:LOC100249084	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF7	SMART:SM01129	TIGR:TC52322	TIGR:TC57957	InterPro:TF_DELLA_N
InterPro:TF_GRAS	UniParc:UPI0001984210	ArrayExpress:VIT_11s0016g04630	EnsemblPlantsGene:VIT_11s0016g04630	EnsemblPlants:VIT_11s0016g04630.t01	unigene:Vvi.24362
unigene:Vvi.6612	RefSeq:XP_002284952	RefSeq:XP_002284952.1	SEG:seg	:	:

Description

DELLA3 [Source:UniProtKB/TrEMBL;Acc:F6HH58]

Coordinates

chr11:-:3959481..3961177

Molecular Weight (calculated)

58694.0 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.074

Length

532 amino acids

Sequence
(BLAST)

001: MGPYDSAIST GSTTSSPSSA AKPSDIDGLL AGAGYKVRST ELHQVAQRLE RLETVMVNAP SEISQLASDV LHCNPSDIAS WVDSMLFEFN PPVSIPSDLS
101: DFSDLTYIDS VVSPAINQTV CNNSWVEHHT PQQQQQELTH QLTVVTAMEE DSGIRLVHMM MTCAESVQRG DLPLAGSLIE EMQALLTRVN TGCGIGKVAR
201: YFIDALNRRV FTPQAPCATG WSNENEILYH HFYEACPYLK FAHFTANQAI LEAFDGHDCV HVVDFNLMHG LQWPALIQAL ALRPGGPPLL RLTGIGPPSP
301: DGRDSLREIG LRLAELARSV NVRFAFRGVA ASRLEDVKPW MLQVSPKEAV AINSIMQLHR LLGSGPTRVS AIETVLGWIR SLNPKIVTVV EQEANHNQSE
401: FLDRFTEALY YYSTMFDSLE ACSLQPEKAV AEIYIQKEIC NVLCCEGSAR VERHEPLAKW RNRLGAAGFR PLNLGSNAFK QASMLLTLFS AEGYCVEEHD
501: GCLTLGWHSR PLIAASAWQP LLDTVINHNN LL

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.