Factsheet for VIT_07s0005g03700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087504	Potato	nucleus	69.61	69.75
Solyc09g066450.1.1	Tomato	cytosol	70.02	68.2
KRH19587	Soybean	cytosol	65.09	60.27
KRH32212	Soybean	cytosol	64.48	58.47
HORVU1Hr1G069140.1	Barley	cytosol	39.84	41.54
VIT_03s0017g01660.t01	Wine grape	plastid	37.58	41.4
TraesCS1B01G314500.1	Wheat	peroxisome	38.6	40.78
EES18409	Sorghum	cytosol	40.86	40.37
TraesCS1A01G304000.1	Wheat	peroxisome	40.45	40.12
TraesCS1D01G303500.1	Wheat	peroxisome	40.04	39.96
Zm00001d038518_P001	Maize	cytosol	40.04	39.24
Os05t0485400-00	Rice	peroxisome	40.04	39.0
VIT_19s0015g01930.t01	Wine grape	cytosol	27.72	32.69
VIT_18s0076g00200.t01	Wine grape	cytosol	20.53	30.67
VIT_08s0056g00050.t01	Wine grape	nucleus	43.53	27.11
VIT_17s0000g10300.t01	Wine grape	nucleus	27.52	25.82
VIT_13s0019g01220.t01	Wine grape	cytosol	24.44	24.9
VIT_06s0009g02390.t01	Wine grape	cytosol	24.23	24.89
VIT_14s0006g00640.t01	Wine grape	cytosol	28.34	24.25
VIT_11s0016g04630.t01	Wine grape	plastid	26.49	24.25
VIT_19s0085g00540.t01	Wine grape	cytosol	26.28	24.15
VIT_02s0025g04000.t01	Wine grape	plastid	32.44	24.09
VIT_01s0011g05260.t01	Wine grape	cytosol	27.1	22.37
VIT_14s0068g01610.t01	Wine grape	plastid	29.98	21.86
VIT_04s0023g01660.t01	Wine grape	cytosol	26.08	20.72

Protein Annotations

EntrezGene:100263529	wikigene:100263529	MapMan:15.5.12	EMBL:AM439347	ProteinID:CAN60709	ProteinID:CAN60709.1
ProteinID:CCB60134	ProteinID:CCB60134.1	UniProt:F6HZL9	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100263529	wikigene:LOC100263529
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF22	InterPro:TF_GRAS	UniParc:UPI00015CAA51
ArrayExpress:VIT_07s0005g03700	EnsemblPlantsGene:VIT_07s0005g03700	EnsemblPlants:VIT_07s0005g03700.t01	RefSeq:XP_002272465	RefSeq:XP_002272465.2	:

Description

No Description!

Coordinates

chr7:+:6614817..6616282

Molecular Weight (calculated)

54047.6 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.133

Length

487 amino acids

Sequence
(BLAST)

001: MKGGFEVVHG ALDLIQPHEQ WEYNIIGLQG ASSSNFPKPM VVENRSNLER NELSEWVEHV TKQLIEDLPE TVGEGLKTEE VTIVGGSFAP VLQWGNEAAG
101: SQSNNLSTGD INGGLSRPDE HGLGLITLLL ECAVAISVDN LGEAHRMLLE LTQMASPYGA SCAERVVSYF AKAMASRVIN SWLGLCSPLI SHKAVHSSLQ
201: IFNNISPFIK FAHFTSNQSI LEAFHRRDMV HIIDLDIMQG LQWPALFHIL ATRIEGPPHI RMTGMGSSIE LLTQTGKQLS NFARRLGLSF EFHPVAKKFG
301: EINDITSLQI RRGETLAVHW LQHSLYDATG PDWKTIRLLE ELAPRVITLV EQEISHGGSF LDRFVGSLHY YSTIFDSLGA SFPSDDPGRH RVEHCLLYRE
401: INNIMAIGGP ARSGEDKFRQ WRSEMAARNC FVQVPMSGNA MAQAQLILNM FPPAHGYSLV QGEGTLRLGW KDTGLYSASA WTSQAYR

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.