Factsheet for VIT_06s0009g02390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0127g00450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	VIT_01s0127g00450.t01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011839	Potato	cytosol	75.74	76.71
Solyc12g099900.1.1	Tomato	nucleus	75.32	76.28
VIT_13s0019g01220.t01	Wine grape	cytosol	76.79	76.15
CDY45059	Canola	cytosol	48.73	75.99
KRH29080	Soybean	cytosol	71.73	74.73
CDY68881	Canola	cytosol	38.4	74.59
PGSC0003DMT400058477	Potato	cytosol	73.84	74.15
KRH24106	Soybean	cytosol, nucleus, peroxisome	70.46	73.41
Solyc01g008910.2.1	Tomato	cytosol	73.0	72.69
Bra014251.1-P	Field mustard	cytosol	67.09	71.46
Bra018848.1-P	Field mustard	cytosol	65.4	70.45
CDY03601	Canola	cytosol	66.67	70.38
AT1G50420.1	Thale cress	cytosol	71.1	69.92
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	68.35	69.68
CDY22795	Canola	cytosol, plastid	64.56	68.92
KRH27822	Soybean	nucleus, plastid	68.57	68.71
GSMUA_Achr8P09690_001	Banana	cytosol	58.86	62.56
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	60.55	60.68
HORVU3Hr1G106260.1	Barley	cytosol	22.15	58.66
Os01t0948200-00	Rice	cytosol	52.11	55.88
TraesCS3A01G487500.1	Wheat	cytosol, plastid	51.69	54.81
TraesCS3B01G535100.1	Wheat	cytosol	51.69	54.08
Zm00001d042127_P001	Maize	plastid	50.84	53.91
TraesCS3D01G482600.1	Wheat	cytosol	51.69	53.85
Zm00001d011881_P001	Maize	cytosol	50.63	53.45
EES02045	Sorghum	cytosol, plastid	50.63	52.29
Os06t0211500-00	Rice	cytosol	17.3	42.93
Os12t0138100-00	Rice	cytosol	40.51	39.02
Os11t0141500-00	Rice	cytosol	40.3	38.82
Zm00001d023248_P001	Maize	cytosol	40.72	38.14
HORVU2Hr1G113490.1	Barley	cytosol	24.89	37.46
HORVU2Hr1G113480.1	Barley	cytosol	24.89	37.46
TraesCS2D01G534700.1	Wheat	cytosol	24.68	37.26
TraesCS6D01G055100.1	Wheat	cytosol	24.47	36.94
TraesCS5B01G133800.1	Wheat	mitochondrion	42.19	36.23
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	23.84	36.22
TraesCS5A01G135000.1	Wheat	mitochondrion	41.77	35.68
HORVU5Hr1G043310.1	Barley	cytosol	41.14	35.45
TraesCS5D01G139500.1	Wheat	mitochondrion	41.77	35.42
TraesCS2A01G532900.1	Wheat	cytosol	32.07	35.35
EES16518	Sorghum	cytosol	33.33	35.11
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	10.34	33.56
KXG22822	Sorghum	mitochondrion	40.51	33.28
CDY37137	Canola	plastid	64.77	32.18
HORVU4Hr1G026010.3	Barley	cytosol	29.96	31.84
HORVU2Hr1G113360.1	Barley	cytosol	31.86	31.79
VIT_19s0015g01930.t01	Wine grape	cytosol	27.64	31.72
TraesCS4A01G185900.1	Wheat	cytosol	29.75	31.61
TraesCS2B01G562400.1	Wheat	cytosol	31.43	31.43
Os11t0141700-00	Rice	cytosol	33.12	31.03
Os12t0138200-00	Rice	cytosol	33.33	30.98
OQU77884	Sorghum	plasma membrane	29.32	30.55
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	29.75	30.52
EES09233	Sorghum	cytosol	31.22	30.39
TraesCS4D01G127800.2	Wheat	mitochondrion	29.75	29.68
VIT_03s0017g01660.t01	Wine grape	plastid	27.64	29.64
Zm00001d052463_P001	Maize	cytosol	32.28	29.25
TraesCSU01G014000.1	Wheat	cytosol	18.14	29.25
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	29.32	28.54
OQU77885	Sorghum	cytosol	28.06	27.59
VIT_18s0076g00200.t01	Wine grape	cytosol	18.78	27.3
VIT_17s0000g10300.t01	Wine grape	nucleus	28.9	26.4
VIT_19s0085g00540.t01	Wine grape	cytosol	29.32	26.23
Zm00001d023247_P001	Maize	plastid	29.75	25.18
VIT_14s0006g00640.t01	Wine grape	cytosol	30.17	25.13
VIT_01s0011g05260.t01	Wine grape	cytosol	31.22	25.08
VIT_11s0016g04630.t01	Wine grape	plastid	28.06	25.0
GSMUA_Achr11P...	Banana	cytosol	57.17	24.59
Os05t0378200-00	Rice	cytosol	28.48	24.5
VIT_07s0005g03700.t01	Wine grape	cytosol	24.89	24.23
VIT_14s0068g01610.t01	Wine grape	plastid	32.91	23.35
Os05t0378500-00	Rice	plastid	26.37	22.32
VIT_02s0025g04000.t01	Wine grape	plastid	29.75	21.49
VIT_04s0023g01660.t01	Wine grape	cytosol	25.95	20.07
VIT_08s0056g00050.t01	Wine grape	nucleus	30.38	18.41
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	1.27	1.7
Os11t0141550-01	Rice	cytosol	0.42	1.55

Protein Annotations

EntrezGene:100253019	wikigene:100253019	MapMan:15.5.12	EMBL:AM432274	ProteinID:CAN60488	ProteinID:CAN60488.1
ProteinID:CCB49108	ProteinID:CCB49108.1	UniProt:F6HAD7	EMBL:FN595504	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009739	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202
EntrezGene:LOC100253019	wikigene:LOC100253019	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF48
InterPro:TF_GRAS	UniParc:UPI0002109DD6	ArrayExpress:VIT_06s0009g02390	EnsemblPlantsGene:VIT_06s0009g02390	EnsemblPlants:VIT_06s0009g02390.t01	RefSeq:XP_002266911
RefSeq:XP_002266911.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:14790160..14794699

Molecular Weight (calculated)

53591.7 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.210

Length

474 amino acids

Sequence
(BLAST)

001: MAPMDERSSS VTSSPLQLFS MMSPSPSLGS PYPWLRELKS EERGLCLIHL LLTCANHVAS GSLENVNIAL EQISQLASAD GDTMQRIAAY FTEALADRIL
101: KTWSGLHKAL NSTRISFPSE DILVRKLFFE LFPFLKMAYV ITNHTIIEAM EGEKMVHIID LNSAEPAQWI ALLQALSARP EGPPHLRITG IHPQKEVLEQ
201: MAHRLTEEAE KLDIPFQFNP IVSKLENLDF EKLRVKTGEA LAISSVLQLH SFLAYDDEFL RKKSPLASKN SNGVQLQRVL QLNQTTLGEL LENDVVNRYS
301: LSPDSASSSP PSFTGSPKMD GFLNALWGLT PKLMVITEQD SNHNGSTLME RLLESLYFYA ALFDCLESTL PRTSIERLKV EKMLFGEEIK NIIACEGVER
401: KERHEKLEKW IQRLDSAGFQ SMPLSYYCML QAKRLLQGYG CDGYRIKEEN GCAVICCQDR PLFSVSAWRN RKWR

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.