Factsheet for TraesCS5B01G133800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G135000.1	Wheat	mitochondrion	98.73	98.2
TraesCS5D01G139500.1	Wheat	mitochondrion	98.73	97.5
HORVU5Hr1G043310.1	Barley	cytosol	91.3	91.64
Os12t0138100-00	Rice	cytosol	70.47	79.06
Os11t0141500-00	Rice	cytosol	70.47	79.06
Zm00001d023248_P001	Maize	cytosol	66.3	72.33
KXG22822	Sorghum	mitochondrion	67.57	64.64
CDY68881	Canola	cytosol	22.46	50.82
CDY45059	Canola	cytosol	27.54	50.0
GSMUA_Achr8P09690_001	Banana	cytosol	37.14	45.96
TraesCS3B01G535100.1	Wheat	cytosol	36.96	45.03
Bra018848.1-P	Field mustard	cytosol	34.6	43.41
Bra014251.1-P	Field mustard	cytosol	34.96	43.37
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	37.14	43.34
VIT_13s0019g01220.t01	Wine grape	cytosol	37.5	43.31
Solyc12g099900.1.1	Tomato	nucleus	36.41	42.95
KRH29080	Soybean	cytosol	35.33	42.86
KRH24106	Soybean	cytosol, nucleus, peroxisome	35.33	42.86
CDY22795	Canola	cytosol, plastid	34.24	42.57
CDY03601	Canola	cytosol	34.6	42.54
PGSC0003DMT400011839	Potato	cytosol	36.05	42.52
VIT_06s0009g02390.t01	Wine grape	cytosol	36.23	42.19
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	35.14	41.72
AT1G50420.1	Thale cress	cytosol	35.87	41.08
KRH27822	Soybean	nucleus, plastid	35.14	41.01
PGSC0003DMT400058477	Potato	cytosol	34.78	40.68
Solyc01g008910.2.1	Tomato	cytosol	34.42	39.92
TraesCS4B01G133000.1	Wheat	cytosol, nucleus, plastid	10.51	39.73
Os12t0138200-00	Rice	cytosol	36.23	39.22
Os11t0141700-00	Rice	cytosol	35.87	39.13
KRH29971	Soybean	cytosol	31.16	38.91
KRH62871	Soybean	cytosol	31.16	38.83
TraesCS2B01G562400.1	Wheat	cytosol	28.8	33.54
TraesCS4B01G342800.1	Wheat	cytosol	23.19	29.09
TraesCS6B01G191800.1	Wheat	cytosol	19.57	27.34
TraesCS1B01G314500.1	Wheat	peroxisome	22.83	27.33
TraesCS2B01G228000.1	Wheat	cytosol	21.92	26.95
TraesCS3B01G262400.1	Wheat	mitochondrion, plastid	25.18	26.28
TraesCS1B01G443800.1	Wheat	cytosol	23.37	24.95
TraesCS7B01G285500.1	Wheat	cytosol	19.38	24.94
TraesCS3B01G424600.1	Wheat	cytosol	23.37	24.86
TraesCS3B01G424500.1	Wheat	cytosol	23.01	24.56
TraesCS2B01G320700.1	Wheat	cytosol, mitochondrion, nucleus	19.57	22.22
TraesCS4B01G043100.1	Wheat	cytosol	24.82	22.06
TraesCS4B01G054000.1	Wheat	cytosol	21.56	21.75
TraesCS5B01G143100.1	Wheat	plastid	23.91	20.69
CDY37137	Canola	plastid	34.06	19.71
TraesCS4B01G124000.1	Wheat	plastid	23.73	19.29
TraesCS2B01G112100.1	Wheat	nucleus	24.82	19.16
GSMUA_Achr11P...	Banana	cytosol	34.6	17.33
Os12t0138166-00	Rice	endoplasmic reticulum, extracellular	3.62	5.67
Os11t0141550-01	Rice	cytosol	0.72	3.1

Protein Annotations

EnsemblPlants:TraesCS5B01G133800.1	EnsemblPlantsGene:TraesCS5B01G133800	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF32
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr5B:+:250565474..250567236

Molecular Weight (calculated)

60696.4 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.284

Length

552 amino acids

Sequence
(BLAST)

001: MRTKMALRVP QMRPALERPE VTHETSSPHR KGVEPRTWGG IASIMFQQQQ PPQRQQQQED VMSSATSSPA STLYSPTPYA FAGTSVQELS SDQCSVRLIS
101: LLYQCASEVA AGEFDRANLC LEHIMQLASL DAPHTLQRLA AVFADALACK LLKLLPGLSR ALLSSSSSDD AHLVPAARRH MFDMLPFLKL AYLTTNHAII
201: EAMEGERFVH VVDLSGPAAN PAQWIALFHA FRGRRDGTPN LRITAVHESK EFLAGMSAVL VREAEAFDIP FQFNAVEARL EDMDLDALRH NLRVRSGEAL
301: AVSVALQLHR LLAADDTGGR RQGGLTPLQI VARSSPSSFG ELLERELNTR LQLSPDASAF SSMSPQSPIG GHFPAGGQQR PKIGSFLSAV KALSPKIMVV
401: TEQEANHNGA AFHERFDEAL NYYASLFDCL ERAAAAQRGS AAAERARVER SVLGEEIRSI VACEGGERKE RHERARQWAG RMEAAGMERV GLSYSGAMEA
501: RKLLQRSGWG GYEVRHDAEG HCFFLCWHKK PLYAVTAWRP AGYHHSGGAR SR

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.