Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG22822 | Sorghum | mitochondrion | 91.5 | 80.24 |
| Os11t0141500-00 | Rice | cytosol | 73.52 | 75.61 |
| Os12t0138100-00 | Rice | cytosol | 73.52 | 75.61 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 73.12 | 67.27 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 72.33 | 66.3 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 72.33 | 65.95 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 72.53 | 65.65 |
| CDY68881 | Canola | cytosol | 24.11 | 50.0 |
| CDY45059 | Canola | cytosol | 29.64 | 49.34 |
| Zm00001d042127_P001 | Maize | plastid | 39.72 | 44.97 |
| Zm00001d011881_P001 | Maize | cytosol | 39.53 | 44.54 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 38.74 | 43.95 |
| Bra014251.1-P | Field mustard | cytosol | 37.75 | 42.92 |
| Bra018848.1-P | Field mustard | cytosol | 37.15 | 42.73 |
| CDY03601 | Canola | cytosol | 37.35 | 42.09 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 39.33 | 42.07 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 37.75 | 41.98 |
| CDY22795 | Canola | cytosol, plastid | 36.76 | 41.89 |
| KRH29080 | Soybean | cytosol | 37.55 | 41.76 |
| Solyc12g099900.1.1 | Tomato | nucleus | 38.34 | 41.45 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 39.13 | 41.42 |
| PGSC0003DMT400011839 | Potato | cytosol | 37.94 | 41.03 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 37.55 | 40.86 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 38.14 | 40.72 |
| AT1G50420.1 | Thale cress | cytosol | 38.14 | 40.04 |
| KRH27822 | Soybean | nucleus, plastid | 37.15 | 39.75 |
| Os12t0138200-00 | Rice | cytosol | 39.72 | 39.41 |
| PGSC0003DMT400058477 | Potato | cytosol | 36.76 | 39.41 |
| Solyc01g008910.2.1 | Tomato | cytosol | 36.76 | 39.08 |
| Os11t0141700-00 | Rice | cytosol | 38.93 | 38.93 |
| KRH62871 | Soybean | cytosol | 33.6 | 38.37 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 36.76 | 38.19 |
| KRH29971 | Soybean | cytosol | 32.81 | 37.56 |
| Zm00001d052463_P001 | Maize | cytosol | 36.17 | 34.99 |
| Zm00001d023247_P001 | Maize | plastid | 36.56 | 33.04 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 27.67 | 30.3 |
| Zm00001d044065_P001 | Maize | cytosol | 26.88 | 28.63 |
| Zm00001d021826_P001 | Maize | cytosol | 24.7 | 27.65 |
| Zm00001d009646_P001 | Maize | plastid | 23.72 | 25.26 |
| Zm00001d038518_P001 | Maize | cytosol | 23.72 | 24.14 |
| Zm00001d015815_P001 | Maize | cytosol | 19.57 | 23.8 |
| Zm00001d042472_P001 | Maize | cytosol | 25.1 | 23.61 |
| Zm00001d046783_P001 | Maize | mitochondrion | 20.75 | 23.03 |
| Zm00001d013465_P001 | Maize | cytosol | 28.26 | 22.88 |
| Zm00001d033680_P001 | Maize | nucleus | 28.26 | 22.7 |
| Zm00001d025133_P001 | Maize | cytosol | 21.54 | 22.06 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 22.73 | 20.87 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 23.12 | 20.56 |
| Zm00001d045507_P001 | Maize | plastid | 24.9 | 20.45 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 19.76 | 20.08 |
| CDY37137 | Canola | plastid | 36.56 | 19.39 |
| Zm00001d049249_P001 | Maize | plastid | 29.45 | 19.23 |
| Zm00001d052380_P001 | Maize | plastid | 24.7 | 18.71 |
| Zm00001d005029_P001 | Maize | plastid | 24.51 | 18.29 |
| GSMUA_Achr11P... | Banana | cytosol | 36.76 | 16.88 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.78 | 2.55 |
| Os11t0141550-01 | Rice | cytosol | 0.2 | 0.78 |
Protein Annotations
| EnsemblPlants:Zm00001d023248_P001 | EnsemblPlants:Zm00001d023248_T001 | EnsemblPlantsGene:Zm00001d023248 | EntrezGene:107228384 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF32 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AQK38713.1 |
| SEG:seg | UniParc:UPI00022152D3 | UniProt:K7TE25 | MapMan:15.5.12 | : | : |
Description
GRAS-transcription factor 29Scarecrow-like protein 3
Coordinates
chr10:+:1456929..1458449
Molecular Weight (calculated)
55341.0 Da
IEP (calculated)
7.335
GRAVY (calculated)
-0.169
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMFQEDTLS SATSSPASSL CTPSPHPHGS SWVQELSHDQ QGLRLISLLY QCAAEVAAGA FDRANFYLEQ ITQLASLDAP HTLQRLAAVF ADALARKLLN
101: LVPGLSRALL PTGPGSPAEA HLVPAARRHL FDVLPFMKLA YLTTNHAVLE AMEGERFVHV VDLSGPAANP VQWIALFHAF RSRRGGPPHL RVTAVHDAKE
201: FLASMACVLA REAEAFDIPF QFSAVEARLE DLDADALRHL LRVRSGEALA VSVVGQLHRL LAADDAGGGR SSRHVHVPGS SCLTPVQIIA RSSPSSFGEL
301: LERELNTRLQ LSPDYSPVLS ISPQSSPVPG QQQQREKAPK LGSFLRAVRA LSPKIMVVAE PEANHNAPTF MERFEEALNY YASLFDCLER ASAAQAHRCA
401: GERARAERLV LGEEIRGVVA REGAERKERH ERLARWARRM EAAGMERVGL SYDGMMEARK LLQSCGWGGG GDDSAYQVAH DASGKAFFFC WHRKPLYSVS
501: AWRPAA
101: LVPGLSRALL PTGPGSPAEA HLVPAARRHL FDVLPFMKLA YLTTNHAVLE AMEGERFVHV VDLSGPAANP VQWIALFHAF RSRRGGPPHL RVTAVHDAKE
201: FLASMACVLA REAEAFDIPF QFSAVEARLE DLDADALRHL LRVRSGEALA VSVVGQLHRL LAADDAGGGR SSRHVHVPGS SCLTPVQIIA RSSPSSFGEL
301: LERELNTRLQ LSPDYSPVLS ISPQSSPVPG QQQQREKAPK LGSFLRAVRA LSPKIMVVAE PEANHNAPTF MERFEEALNY YASLFDCLER ASAAQAHRCA
401: GERARAERLV LGEEIRGVVA REGAERKERH ERLARWARRM EAAGMERVGL SYDGMMEARK LLQSCGWGGG GDDSAYQVAH DASGKAFFFC WHRKPLYSVS
501: AWRPAA
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.