Factsheet for Zm00001d042127_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011514_P001
Zm00001d029638_P001
Zm00001d030959_P001
Zm00001d043816_P001
Zm00001d043971_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Zm00001d011514_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d029638_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d030959_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043816_P001	AT4G22220.1	21798944
AT1G50420.1	Zm00001d043971_P001	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02045	Sorghum	cytosol, plastid	96.2	93.68
Zm00001d011881_P001	Maize	cytosol	92.17	91.76
HORVU3Hr1G106260.1	Barley	cytosol	36.69	91.62
Os01t0948200-00	Rice	cytosol	87.25	88.24
TraesCS3A01G487500.1	Wheat	cytosol, plastid	86.58	86.58
TraesCS3D01G482600.1	Wheat	cytosol	87.25	85.71
TraesCS3B01G535100.1	Wheat	cytosol	86.13	84.99
GSMUA_Achr8P09690_001	Banana	cytosol	63.31	63.45
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	62.86	59.41
CDY68881	Canola	cytosol	31.1	56.97
CDY45059	Canola	cytosol	37.36	54.93
Bra018848.1-P	Field mustard	cytosol	51.9	52.73
Bra014251.1-P	Field mustard	cytosol	52.35	52.58
PGSC0003DMT400011839	Potato	cytosol	54.14	51.71
CDY03601	Canola	cytosol	51.9	51.67
CDY22795	Canola	cytosol, plastid	51.23	51.58
Solyc12g099900.1.1	Tomato	nucleus	53.91	51.5
VIT_13s0019g01220.t01	Wine grape	cytosol	54.59	51.05
VIT_06s0009g02390.t01	Wine grape	cytosol	53.91	50.84
PGSC0003DMT400058477	Potato	cytosol	53.24	50.42
Solyc01g008910.2.1	Tomato	cytosol	53.69	50.42
AT1G50420.1	Thale cress	cytosol	53.47	49.59
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	51.45	49.46
KRH29080	Soybean	cytosol	49.44	48.57
KRH24106	Soybean	cytosol, nucleus, peroxisome	48.77	47.91
KRH27822	Soybean	nucleus, plastid	50.56	47.78
KRH29971	Soybean	cytosol	41.61	42.08
KRH62871	Soybean	cytosol	41.39	41.76
Zm00001d023248_P001	Maize	cytosol	44.97	39.72
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	37.81	36.58
Zm00001d052464_P001	Maize	cytosol, plasma membrane, plastid	35.79	32.85
Zm00001d052463_P001	Maize	cytosol	37.36	31.93
Zm00001d044065_P001	Maize	cytosol	32.89	30.95
Zm00001d021826_P001	Maize	cytosol	29.53	29.2
Zm00001d023247_P001	Maize	plastid	36.24	28.93
Zm00001d015815_P001	Maize	cytosol	26.62	28.61
Zm00001d046783_P001	Maize	mitochondrion	28.86	28.29
Zm00001d042472_P001	Maize	cytosol	32.66	27.14
Zm00001d013465_P001	Maize	cytosol	34.9	24.96
Zm00001d033680_P001	Maize	nucleus	34.68	24.6
Zm00001d038518_P001	Maize	cytosol	27.29	24.55
Zm00001d025133_P001	Maize	cytosol	27.07	24.49
Zm00001d009646_P001	Maize	plastid	25.73	24.21
GSMUA_Achr11P...	Banana	cytosol	59.51	24.14
Zm00001d003657_P001	Maize	cytosol, mitochondrion, nucleus	26.85	24.1
CDY37137	Canola	plastid	51.23	24.0
Zm00001d033834_P001	Maize	cytosol, plastid	28.64	23.23
Zm00001d013385_P001	Maize	cytosol, plastid	29.31	23.02
Zm00001d052380_P001	Maize	plastid	32.89	22.01
Zm00001d045507_P001	Maize	plastid	29.53	21.43
Zm00001d005029_P001	Maize	plastid	32.44	21.39
Zm00001d049249_P001	Maize	plastid	34.68	20.0

Protein Annotations

EntrezGene:100281386	MapMan:15.5.12	UniProt:B6SV05	EMBL:EU956570	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	ProteinID:ONM34584.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF13
InterPro:Scarecrow-like_3	InterPro:TF_GRAS	UniParc:UPI000182B262	EnsemblPlantsGene:Zm00001d042127	EnsemblPlants:Zm00001d042127_P001	EnsemblPlants:Zm00001d042127_T001
SEG:seg	:	:	:	:	:

Description

GRAS-transcription factor 4GRAS family transcription factor containing protein

Coordinates

chr3:-:152192576..152193919

Molecular Weight (calculated)

48473.7 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.145

Length

447 amino acids

Sequence
(BLAST)

001: MVQDEGSSSS VTSSPLHNFS TMPLHASPGG APAPTPPWLV RELRSDERGL CLIHLLLNCA AAAGAGRLDA ANAALEHIAS LASPDGDAMQ RVAAAFAEAL
101: ARRALRAWPG LCRALLLPRA GPTPAELAAA RRHFLDLCPF LRLAGAAANQ SVLEAMESER MVHVVDLGGA DAAQWVELLH LLAARPEGPP HLRLTAVHEH
201: RDVLTQTAVA LTKEAERLDV PFQFNPVVSR LEALDVESLR VKTGEALAVT SSLQLHCLLA SDDDSGKHHQ GSGDHKRQRS PESGVSPSTS RADAFLGALW
301: GLSPKVVVVT EQEASHNAAP LTERFVEALN YYAALFDCLE SAAPRGSVER ARVERWLLGE EVKNIVACDG ADRRERHERL DRWAARMEGA GFARVPLSYY
401: ALLQARRAAQ GLGCDGFKVR EEKGAFFLCW QERAIFSVSA WRGRRFD

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.