Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81603 | Sorghum | cytosol | 54.45 | 75.14 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 69.23 | 68.67 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 58.91 | 60.62 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 59.31 | 60.29 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 58.91 | 60.12 |
| Os04t0432100-00 | Rice | nucleus | 60.73 | 59.52 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 57.69 | 59.5 |
| VIT_18s0076g00200.t01 | Wine grape | cytosol | 31.17 | 47.24 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 40.28 | 44.62 |
| KRH34954 | Soybean | cytosol | 35.83 | 43.7 |
| GSMUA_Achr10P... | Banana | nucleus | 37.25 | 41.91 |
| KRH08555 | Soybean | cytosol | 39.47 | 41.4 |
| PGSC0003DMT400023877 | Potato | cytosol | 34.01 | 40.78 |
| KRG91825 | Soybean | nucleus | 37.65 | 40.0 |
| KRH70202 | Soybean | cytosol | 38.46 | 39.92 |
| Solyc11g017100.1.1 | Tomato | cytosol | 35.83 | 37.18 |
| Zm00001d021826_P001 | Maize | cytosol | 26.32 | 28.76 |
| Zm00001d042127_P001 | Maize | plastid | 24.49 | 27.07 |
| Zm00001d015815_P001 | Maize | cytosol | 22.27 | 26.44 |
| Zm00001d011881_P001 | Maize | cytosol | 23.68 | 26.06 |
| Zm00001d044065_P001 | Maize | cytosol | 24.29 | 25.26 |
| Zm00001d046783_P001 | Maize | mitochondrion | 21.86 | 23.68 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 26.32 | 23.59 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 27.13 | 23.55 |
| Zm00001d038518_P001 | Maize | cytosol | 22.67 | 22.54 |
| Zm00001d009646_P001 | Maize | plastid | 21.46 | 22.32 |
| Zm00001d042472_P001 | Maize | cytosol | 24.09 | 22.12 |
| Zm00001d023248_P001 | Maize | cytosol | 22.06 | 21.54 |
| Zm00001d052380_P001 | Maize | plastid | 27.13 | 20.06 |
| Zm00001d045507_P001 | Maize | plastid | 24.9 | 19.97 |
| Zm00001d013465_P001 | Maize | cytosol | 25.1 | 19.84 |
| Zm00001d005029_P001 | Maize | plastid | 27.13 | 19.76 |
| Zm00001d033680_P001 | Maize | nucleus | 24.9 | 19.52 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 19.23 | 19.51 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 18.02 | 19.26 |
| Zm00001d052463_P001 | Maize | cytosol | 19.64 | 18.55 |
| Zm00001d049249_P001 | Maize | plastid | 28.54 | 18.19 |
| Zm00001d023247_P001 | Maize | plastid | 18.22 | 16.07 |
Protein Annotations
| EnsemblPlants:Zm00001d025133_P001 | EnsemblPlants:Zm00001d025133_T001 | EnsemblPlantsGene:Zm00001d025133 | EntrezGene:103641655 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 |
| InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF19 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:AQK43063.1 |
| SEG:seg | UniParc:UPI000221B3DF | UniProt:K7UIJ3 | MapMan:15.5.12 | : | : |
Description
GRAS-transcription factor 30Protein SCARECROW
Coordinates
chr10:+:105808862..105810346
Molecular Weight (calculated)
52104.7 Da
IEP (calculated)
5.560
GRAVY (calculated)
-0.246
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTLSLAIN DGGGGGTTKK RKLLRDSADD DVMSRDGGGD RSSRVVARLV QVQARERKLA KLEAAAADDD DHDHDPRVAA AETSPGDIGG GLRLMHLLLS
101: SVAAAESGDA REAAAALREA CRRASFRSGD PAQRVAAYFA DALASRLVGR PPPTRAEQFL AYTMFYQASP IYQLAHFTAN QAILEAFESG GGRLHVVDFD
201: VSYGFQWPSL MQSLSDAAAS TSSSSRDGDC AEPVSLRITG FGTSADELRQ TEARLARFAS GCPNLRFEFE GIVDGADDSE RITVDDGATV VVNLVFPAAA
301: AAAARSSSAT SSTREGACSA LARIRSLDPS LVFLVEKGGG GGNATSRGRR PSLLAPFAAS LRYFAAVFDS LHERLPADSA ERLAIERDHL GAEISDAVAS
401: LADYSSSSYG GDDEPSSSAT AGCSWRQMME RAGFEGVELS SRAVSQAKLL LKMKSGCGGG FRVVEEGDGG RAVSLGWRDG RAQLITATGW RRCR
101: SVAAAESGDA REAAAALREA CRRASFRSGD PAQRVAAYFA DALASRLVGR PPPTRAEQFL AYTMFYQASP IYQLAHFTAN QAILEAFESG GGRLHVVDFD
201: VSYGFQWPSL MQSLSDAAAS TSSSSRDGDC AEPVSLRITG FGTSADELRQ TEARLARFAS GCPNLRFEFE GIVDGADDSE RITVDDGATV VVNLVFPAAA
301: AAAARSSSAT SSTREGACSA LARIRSLDPS LVFLVEKGGG GGNATSRGRR PSLLAPFAAS LRYFAAVFDS LHERLPADSA ERLAIERDHL GAEISDAVAS
401: LADYSSSSYG GDDEPSSSAT AGCSWRQMME RAGFEGVELS SRAVSQAKLL LKMKSGCGGG FRVVEEGDGG RAVSLGWRDG RAQLITATGW RRCR
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.