Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 93.39 | 94.17 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 93.8 | 93.42 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 89.88 | 90.81 |
| Os04t0432100-00 | Rice | nucleus | 65.08 | 62.5 |
| OQU81603 | Sorghum | cytosol | 45.45 | 61.45 |
| Zm00001d025133_P001 | Maize | cytosol | 60.12 | 58.91 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 59.5 | 57.83 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 41.94 | 45.52 |
| VIT_18s0076g00200.t01 | Wine grape | cytosol | 30.58 | 45.4 |
| GSMUA_Achr10P... | Banana | nucleus | 40.29 | 44.42 |
| KRH34954 | Soybean | cytosol | 35.74 | 42.72 |
| PGSC0003DMT400023877 | Potato | cytosol | 33.88 | 39.81 |
| KRH08555 | Soybean | cytosol | 38.64 | 39.7 |
| KRG91825 | Soybean | nucleus | 37.6 | 39.14 |
| KRH70202 | Soybean | cytosol | 38.22 | 38.87 |
| Solyc11g017100.1.1 | Tomato | cytosol | 35.54 | 36.13 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 23.97 | 29.37 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 23.35 | 26.59 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 24.59 | 26.5 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 22.93 | 24.4 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 25.62 | 23.09 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 25.83 | 22.73 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 22.93 | 22.7 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 14.67 | 22.61 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 22.73 | 22.54 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 23.35 | 22.24 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 14.26 | 21.97 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 23.35 | 21.77 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 22.93 | 21.47 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 13.43 | 20.83 |
| TraesCS5D01G148000.1 | Wheat | plastid | 27.27 | 20.21 |
| TraesCS7D01G053600.1 | Wheat | plastid | 25.21 | 19.46 |
| TraesCS4D01G122000.1 | Wheat | plastid | 27.27 | 19.44 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 22.11 | 19.14 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 24.38 | 18.94 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 27.69 | 18.74 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 17.15 | 17.47 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G302600.1 | EnsemblPlantsGene:TraesCS2D01G302600 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF19 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr2D:-:386480154..386481608
Molecular Weight (calculated)
52023.4 Da
IEP (calculated)
6.850
GRAVY (calculated)
-0.286
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLTLSLGVN GGAAAAKKRK VMDGVGDVGV LGAGDGGDRA TVMRLLQARD RMVKVELDHD DGDVSDRGAS PLMRLLLSSA AAGEVGDMHA AAMALQEVYR
101: HASFRGGDPA QRVASYFADA LASRLLLPPP AKAKTTTTTT REEQFLAFTM FYQASPFYQF AHFTANQAIV EAFEAGGRRR LHVVDFDVSF GFQWPSLMQS
201: LSDAATTSSS LSSQDDSGDC CDEPVSLRIT GFGASADKLR DTEARLARFA DGCPNLRFEF EGVVNNGPEE GRHERITTDP AATVVVNLVF PAAQNVRQSS
301: WDPRSASAHI RSLNPSLVFL IDKVDEGNGG VKGAGRCGSA SLLPRFAANL RYYAAVFESL HECLPADSAE RIAIERDHLG VEISDAMASL DRRRHDGDRA
401: ADKVSRGWKE RLESAGFEDA RLSSRTVSQA KLLLKMKSGG CGGGGFRVME AGDGKAMALG WRDRALITAS AWRPCRQSVG KNEP
101: HASFRGGDPA QRVASYFADA LASRLLLPPP AKAKTTTTTT REEQFLAFTM FYQASPFYQF AHFTANQAIV EAFEAGGRRR LHVVDFDVSF GFQWPSLMQS
201: LSDAATTSSS LSSQDDSGDC CDEPVSLRIT GFGASADKLR DTEARLARFA DGCPNLRFEF EGVVNNGPEE GRHERITTDP AATVVVNLVF PAAQNVRQSS
301: WDPRSASAHI RSLNPSLVFL IDKVDEGNGG VKGAGRCGSA SLLPRFAANL RYYAAVFESL HECLPADSAE RIAIERDHLG VEISDAMASL DRRRHDGDRA
401: ADKVSRGWKE RLESAGFEDA RLSSRTVSQA KLLLKMKSGG CGGGGFRVME AGDGKAMALG WRDRALITAS AWRPCRQSVG KNEP
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.