Factsheet for TraesCS2D01G534700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G406300.1
TraesCS1B01G436500.1
TraesCS1D01G414700.1
TraesCS3A01G240500.1
TraesCS3B01G268800.1
TraesCS3D01G240900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	TraesCS1A01G406300.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1B01G436500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS1D01G414700.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3A01G240500.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3B01G268800.1	AT4G22220.1	21798944
AT1G50420.1	TraesCS3D01G240900.1	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G055100.1	Wheat	cytosol	86.31	86.31
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	72.29	72.76
TraesCS2A01G532900.1	Wheat	cytosol	94.59	69.07
TraesCS2B01G562400.1	Wheat	cytosol	91.4	60.55
HORVU2Hr1G113360.1	Barley	cytosol	79.94	52.84
CDY68881	Canola	cytosol	29.94	38.52
CDY45059	Canola	cytosol	36.94	38.16
OQU77884	Sorghum	plasma membrane	48.41	33.41
Zm00001d037901_P001	Maize	cytosol, peroxisome, plastid	48.09	32.68
TraesCS3D01G482600.1	Wheat	cytosol	47.13	32.53
OQU77885	Sorghum	cytosol	46.5	30.29
GSMUA_Achr8P09690_001	Banana	cytosol	40.76	28.7
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	40.45	26.85
Os05t0378200-00	Rice	cytosol	45.86	26.13
Bra014251.1-P	Field mustard	cytosol	36.94	26.07
KRH24106	Soybean	cytosol, nucleus, peroxisome	37.58	25.93
KRH29080	Soybean	cytosol	37.26	25.71
Bra018848.1-P	Field mustard	cytosol	35.99	25.68
CDY22795	Canola	cytosol, plastid	36.31	25.68
PGSC0003DMT400011839	Potato	cytosol	37.9	25.43
Solyc12g099900.1.1	Tomato	nucleus	37.9	25.43
Solyc01g008910.2.1	Tomato	cytosol	38.53	25.42
CDY03601	Canola	cytosol	36.31	25.39
KRH29971	Soybean	cytosol	35.67	25.34
VIT_13s0019g01220.t01	Wine grape	cytosol	38.53	25.31
PGSC0003DMT400058477	Potato	cytosol	37.9	25.21
VIT_06s0009g02390.t01	Wine grape	cytosol	37.26	24.68
KRH62871	Soybean	cytosol	34.71	24.61
AT1G50420.1	Thale cress	cytosol	37.58	24.48
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	33.44	22.58
TraesCS5D01G139500.1	Wheat	mitochondrion	40.13	22.54
TraesCS6D01G153000.1	Wheat	cytosol	27.39	21.77
KRH27822	Soybean	nucleus, plastid	32.48	21.56
TraesCS2D01G208500.1	Wheat	cytosol	29.94	20.94
TraesCS4D01G127800.2	Wheat	mitochondrion	30.57	20.21
TraesCS7D01G379200.1	Wheat	cytosol	27.07	20.0
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	30.25	19.43
TraesCS1D01G303500.1	Wheat	peroxisome	28.98	18.65
TraesCS3D01G385500.1	Wheat	cytosol	30.57	18.5
TraesCS3D01G385400.1	Wheat	cytosol	30.25	18.38
TraesCS1D01G421200.1	Wheat	cytosol	29.3	18.11
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	30.57	17.88
TraesCS4D01G054000.1	Wheat	cytosol	28.03	16.0
TraesCS4D01G040400.1	Wheat	cytosol	30.25	15.25
TraesCS2D01G095300.1	Wheat	nucleus	34.08	14.96
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	22.61	14.67
TraesCS7D01G053600.1	Wheat	plastid	28.03	14.04
TraesCS5D01G148000.1	Wheat	plastid	28.34	13.63
TraesCS4D01G122000.1	Wheat	plastid	29.3	13.55
CDY37137	Canola	plastid	35.99	11.84
GSMUA_Achr11P...	Banana	cytosol	40.45	11.52

Protein Annotations

EnsemblPlants:TraesCS2D01G534700.1	EnsemblPlantsGene:TraesCS2D01G534700	InterPro:IPR005202	InterPro:TF_GRAS	PANTHER:PTHR31636	PANTHER:PTHR31636:SF123
PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:	:

Description

No Description!

Coordinates

chr2D:+:618202754..618203698

Molecular Weight (calculated)

34827.9 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.085

Length

314 amino acids

Sequence
(BLAST)

001: MCPFPRLAGT AANYAIIDAV QSERNAVLHV VDLGGADPGQ WLLLLRFFAN RPGASTHHQI LRLTIVNEED EFLSSTAALL ALEAEHLHVG FQFHPVKLHI
101: DQLLSIEPLD VRSGEALVVV STLQLHRLLA DEFAEAATRP HDRKGKRQAH ATMTRADALL RNLAELSPKL MVVTEQEANH NGMEFKDRFG NALKYYGALF
201: DALEESVPAR GSALERAEVE RCLLLPEIRD IVACDGAQRR ERHEQMVHWA ARMEAAGFVP ATMSPGTVAQ TAILARMLAG DSRAYRVCGE NDGRCIFIYR
301: GDVPMFSVST WRTV

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.