Factsheet for TraesCS7D01G053600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G430600.1	Wheat	plastid	95.53	96.46
TraesCS7A01G059000.1	Wheat	plastid	96.33	96.33
HORVU7Hr1G010620.1	Barley	cytosol	84.53	94.14
Os06t0127800-01	Rice	plastid	76.71	77.96
Zm00001d045507_P001	Maize	plastid	75.44	76.79
EER87757	Sorghum	mitochondrion	75.28	74.1
GSMUA_Achr1P16230_001	Banana	cytosol	33.17	58.43
GSMUA_Achr7P05850_001	Banana	mitochondrion	47.37	45.69
GSMUA_Achr1P18840_001	Banana	cytosol	43.7	44.63
VIT_02s0025g04000.t01	Wine grape	plastid	45.45	43.45
PGSC0003DMT400007879	Potato	plastid	44.98	41.53
Solyc08g080400.1.1	Tomato	plastid	44.82	41.38
KRH57249	Soybean	plastid	41.95	39.61
Bra026999.1-P	Field mustard	nucleus, plastid	37.96	39.47
KRH03976	Soybean	mitochondrion, nucleus	41.95	39.31
CDY49199	Canola	plastid	39.39	39.08
Bra027620.1-P	Field mustard	plastid	39.23	38.92
AT1G63100.2	Thale cress	plastid	40.67	38.75
CDY45974	Canola	plastid	39.71	38.6
CDY47352	Canola	plastid	39.08	38.46
CDY70213	Canola	plastid	39.39	38.41
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.25	33.64
TraesCS6D01G153000.1	Wheat	cytosol	19.46	30.89
TraesCS3D01G482600.1	Wheat	cytosol	20.73	28.57
TraesCS3D01G385500.1	Wheat	cytosol	23.6	28.52
TraesCS2D01G208500.1	Wheat	cytosol	20.26	28.29
TraesCS2D01G534700.1	Wheat	cytosol	14.04	28.03
TraesCS7D01G379200.1	Wheat	cytosol	18.98	28.0
TraesCS1D01G303500.1	Wheat	peroxisome	21.69	27.87
TraesCS3D01G385400.1	Wheat	cytosol	22.97	27.85
TraesCS4D01G338800.1	Wheat	cytoskeleton, cytosol, peroxisome, plastid	21.37	27.4
TraesCS3D01G220100.3	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.97	26.82
TraesCS1D01G421200.1	Wheat	cytosol	21.05	25.98
TraesCS2D01G055700.1	Wheat	extracellular, golgi, mitochondrion, plastid	12.92	25.96
TraesCS6D01G055100.1	Wheat	cytosol	12.76	25.48
TraesCS2D01G302600.1	Wheat	cytosol, mitochondrion, nucleus	19.46	25.21
TraesCS4D01G054000.1	Wheat	cytosol	21.53	24.55
TraesCS5D01G139500.1	Wheat	mitochondrion	21.21	23.79
TraesCS5D01G148000.1	Wheat	plastid	24.72	23.74
TraesCS4D01G040400.1	Wheat	cytosol	23.13	23.27
TraesCS4D01G122000.1	Wheat	plastid	24.4	22.53
TraesCS4D01G127800.2	Wheat	mitochondrion	16.27	21.47
TraesCS2D01G095300.1	Wheat	nucleus	23.92	20.98

Protein Annotations

EnsemblPlants:TraesCS7D01G053600.1	EnsemblPlantsGene:TraesCS7D01G053600	InterPro:IPR005202	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	PANTHER:PTHR31636
PANTHER:PTHR31636:SF16	PFAM:PF03514	PFscan:PS50985	SEG:seg	MapMan:15.5.12	:

Description

No Description!

Coordinates

chr7D:+:28046472..28049197

Molecular Weight (calculated)

66127.8 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.230

Length

627 amino acids

Sequence
(BLAST)

001: MLAGCSSLSS RHQMSTAQRL PCGFSKRGGR GDSAVPGAAP RAVPGGDGRG GNGTCSFRAH PAPPVTQAVS WGAKPEPSVV ADSGGWERRG GAVKRAHEEE
101: AVDEYGAPAV RAKRTRMGGD GDEVWFHQSI AGPAAMMQVA AGEGGREEEE VAEEQKVFLV PSAAAFPHGM AAAAGPSSLA AAKQEEFSKS PSHSSSSSGT
201: DGGSSAMLPV EPAGVRGFVV PEAEREALEL VGALTACAEA LAGCQHDAAN YYLARLGEAA SPSGPTPLHR VAACFAEALA LRAANMWPHV FDVTPPRELT
301: DGAFHDDDDA LALRVLNSVT PIPRFLHFTL NERLLRAFDG HDRVHIIDFD IKQGLQWPSL LQSLATRTPQ PPAHVRITGV GSSRQELQDT GARLAHVAAG
401: LGLAFEFHAV VDRLEDVRLW MLHVKRGERV AVNCVLAAHR LLRDETGGAL SDFLGLVRST SAAVLLLGEH EAAGLNAGRW EARFARALQH YAAAFDAVGA
501: AGLPPASAAR AKAEEMFARE IRNAVAFEGP DRSERHESFA GWRRRMEDGG FRSAGIGDRE AMQGRMIARM FAPGNYGVHP QGDGEGLTLR WLDTPLYTVT
601: AWTPVGDGAG GSATVSASTT ASHSLQS

Best Arabidopsis Sequence Match ( AT1G63100.1 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGDDEEKVCF VPSEVISQPL PNWVDSVITE LAGIGDKDVE SSLPAAVKEA SGGSSTSASS
201: ESRSLSHRVP EPTNGSRNPY SHRGATEERT TGNINNNNNR NDLQRDFELV NLLTGCLDAI RSRNIAAINH FIARTGDLAS PRGRTPMTRL IAYYIEALAL
301: RVARMWPHIF HIAPPREFDR TVEDESGNAL RFLNQVTPIP KFIHFTANEM LLRAFEGKER VHIIDFDIKQ GLQWPSFFQS LASRINPPHH VRITGIGESK
401: LELNETGDRL HGFAEAMNLQ FEFHPVVDRL EDVRLWMLHV KEGESVAVNC VMQMHKTLYD GTGAAIRDFL GLIRSTNPIA LVLAEQEAEH NSEQLETRVC
501: NSLKYYSAMF DAIHTNLATD SLMRVKVEEM LFGREIRNIV ACEGSHRQER HVGFRHWRRM LEQLGFRSLG VSEREVLQSK MLLRMYGSDN EGFFNVERSD
601: EDNGGEGGRG GGVTLRWSEQ PLYTISAWTT GGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.