CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03976	Soybean	mitochondrion, nucleus	91.27	90.58
VIT_02s0025g04000.t01	Wine grape	plastid	65.96	66.77
GSMUA_Achr1P16230_001	Banana	cytosol	33.73	62.92
Solyc08g080400.1.1	Tomato	plastid	62.8	61.41
PGSC0003DMT400007879	Potato	plastid	62.65	61.27
AT1G63100.2	Thale cress	plastid	54.97	55.47
CDY49199	Canola	plastid	51.96	54.59
Bra027620.1-P	Field mustard	plastid	51.51	54.11
CDY47352	Canola	plastid	51.51	53.69
CDY70213	Canola	plastid	51.81	53.5
CDY45974	Canola	plastid	51.81	53.33
Bra026999.1-P	Field mustard	nucleus, plastid	47.89	52.74
GSMUA_Achr7P05850_001	Banana	mitochondrion	48.8	49.85
GSMUA_Achr1P18840_001	Banana	cytosol	45.63	49.35
HORVU7Hr1G010620.1	Barley	cytosol	36.75	43.34
Os06t0127800-01	Rice	plastid	40.21	43.27
TraesCS4A01G430600.1	Wheat	plastid	39.61	42.35
TraesCS7D01G053600.1	Wheat	plastid	39.61	41.95
TraesCS7A01G059000.1	Wheat	plastid	39.16	41.47
Zm00001d045507_P001	Maize	plastid	38.4	41.4
EER87757	Sorghum	mitochondrion	38.55	40.19
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.08	35.5
KRG92263	Soybean	cytosol	20.48	34.09
KRH29015	Soybean	cytosol	14.01	32.63
KRH29089	Soybean	mitochondrion	21.23	31.9
KRH34954	Soybean	cytosol	19.28	31.6
KRH24117	Soybean	plastid	20.63	30.79
KRH63032	Soybean	cytosol	23.04	30.42
KRH42544	Soybean	cytosol, nucleus, plastid	23.64	30.37
KRH54840	Soybean	cytosol	23.04	30.3
KRH34544	Soybean	cytosol	21.99	29.92
KRH58636	Soybean	nucleus	23.19	29.45
KRG91825	Soybean	nucleus	20.48	29.25
KRH08555	Soybean	cytosol	20.33	28.66
KRH62871	Soybean	cytosol	18.83	28.22
KRH70202	Soybean	cytosol	20.18	28.15
KRH29080	Soybean	cytosol	19.28	28.13
KRH24106	Soybean	cytosol, nucleus, peroxisome	19.13	27.91
KRH03910	Soybean	cytosol	21.23	27.43
KRH57194	Soybean	cytosol	20.93	27.2
KRH29971	Soybean	cytosol	18.07	27.15
KRH19587	Soybean	cytosol	21.39	27.0
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	18.52	26.45
KRH27822	Soybean	nucleus, plastid	18.52	26.0
KRH32212	Soybean	cytosol	20.63	25.51
KRH44884	Soybean	cytosol	16.42	25.17
KRH06900	Soybean	plastid	25.6	24.78
KRH30942	Soybean	cytosol	22.14	24.71
KRH24039	Soybean	cytosol	17.77	24.53
KRG94590	Soybean	plastid	25.15	24.52
KRG97933	Soybean	nucleus	21.54	24.49
KRH13057	Soybean	cytosol	20.33	24.32
KRH40615	Soybean	nucleus, plastid	23.95	19.32
KRH00551	Soybean	nucleus, plastid	24.25	19.12

Protein Annotations

EntrezGene:100786173	MapMan:15.5.12	EMBL:ACUP02002822	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G049300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1K0D0	InterPro:IPR005202
EnsemblPlants:KRH57249	ProteinID:KRH57249	ProteinID:KRH57249.1	ProteinID:KRH57250.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI0002339411	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:4398234..4401872

Molecular Weight (calculated)

73764.4 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.464

Length

664 amino acids

Sequence
(BLAST)

001: MLAGCSSSTL LSPRHRLRSE ASAQFQACHF QLPSSMSTQR LDLPCTTTTF TRNNKDTTSS RSVLSVDQKP IEAKTSTCSL KQHIRLPPLA ITAAPSPLVE
101: DSIIKDNTNN NKSLKRLAAE HQDDSFTNNI AKRKKKSSST ECDWFQPDVV GTTLGGFNNN NNNNNTSLAS FSSEEDRVCF VPSEVVSHSA PFPLNPWLES
201: CVTKITNFGE GSHRPHHHHH SDHASGSVSN ASSESQSLRL NDNVSEHEVG NGSGNPYYHH EVDTGEEDNH HGFELVSLLT GCVDAIGSRN VTAINHFIAK
301: LGDLASPKGT TSISRICAYF TEALAIRVTR LWPHVFHITT TTTSRDMVED DESATAMRLL NQVTPIPRFL HFTSNEMLLR AFEGKDRVHI IDFDIKQGLQ
401: WSGLFQSLAS RSNPPTHVRI TGIGESKQDL NETGERLAGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEH ETVAVNCVLQ LHKTLYDGSG GALRDFLGLI
501: RSTNPSVVVV AEQEAEHNEN RLEGRVCNSL KYYSALFDSI DESGLPQESA VRVKIEEMYA KEIRNIVACE GRERVERHES FGNWRRMMVE QGGFRCMGVT
601: ERELSQSQML LKMYSCESYS VKKQEKEGAT GVTLSWLEQP LYTVSAWGPV DAAAGTSSSF SQPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.