CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH04424
KRH18664
KRH28353
KRH58109
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	KRG89812	AT2G41100.1	17360592
AT5G41920.1	KRG94975	AT2G41100.1	17360592
AT5G41920.1	KRH18664	AT2G41100.1	17360592
AT5G41920.1	KRH04424	AT4G37650.1	18500650
AT5G41920.1	KRH28353	AT4G37650.1	18500650
AT5G41920.1	KRH58109	AT4G37650.1	18500650
AT5G41920.1	KRH77129	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24117	Soybean	plastid	92.53	91.91
VIT_03s0017g01660.t01	Wine grape	plastid	77.15	77.15
Bra025456.1-P	Field mustard	mitochondrion	40.27	72.36
PGSC0003DMT400030652	Potato	cytosol	66.29	71.29
CDY64484	Canola	mitochondrion	39.59	71.14
Solyc07g043330.1.1	Tomato	plastid	67.87	69.44
AT5G41920.1	Thale cress	cytosol	62.44	68.15
CDY27670	Canola	cytosol	60.18	65.84
Os07t0567700-02	Rice	cytosol	65.61	63.46
Zm00001d021826_P001	Maize	cytosol	64.25	62.83
TraesCS2D01G208500.1	Wheat	cytosol	63.57	62.58
TraesCS2B01G228000.1	Wheat	cytosol	63.35	62.36
TraesCS2A01G200700.1	Wheat	cytosol	63.35	62.22
KXG36498	Sorghum	cytosol, plastid	64.03	61.52
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	42.76	61.36
HORVU0Hr1G003230.2	Barley	mitochondrion	60.18	57.45
KRH29015	Soybean	cytosol	22.85	35.44
KRH19587	Soybean	cytosol	40.95	34.41
KRH32212	Soybean	cytosol	41.18	33.89
KRG92263	Soybean	cytosol	29.64	32.83
KRH34954	Soybean	cytosol	28.96	31.6
KRH40615	Soybean	nucleus, plastid	53.39	28.68
KRH34544	Soybean	cytosol	31.22	28.28
KRH00551	Soybean	nucleus, plastid	53.62	28.15
KRH29971	Soybean	cytosol	27.6	27.6
KRH62871	Soybean	cytosol	27.6	27.54
KRG91825	Soybean	nucleus	28.96	27.53
KRH70202	Soybean	cytosol	29.64	27.52
KRH29080	Soybean	cytosol	28.28	27.47
KRH24106	Soybean	cytosol, nucleus, peroxisome	28.28	27.47
KRH08555	Soybean	cytosol	28.73	26.96
KRH54840	Soybean	cytosol	30.77	26.93
KRH63032	Soybean	cytosol	30.32	26.64
KRH24039	Soybean	cytosol	28.51	26.2
KRH57194	Soybean	cytosol	29.64	25.64
KRH42544	Soybean	cytosol, nucleus, plastid	29.86	25.53
KRH58636	Soybean	nucleus	30.09	25.43
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	26.7	25.38
KRH27822	Soybean	nucleus, plastid	26.7	24.95
KRH03910	Soybean	cytosol	28.51	24.51
KRH13057	Soybean	cytosol	30.09	23.96
KRG97933	Soybean	nucleus	31.0	23.46
KRH30942	Soybean	cytosol	30.77	22.86
KRG94590	Soybean	plastid	34.16	22.17
KRH44884	Soybean	cytosol	21.72	22.17
KRH06900	Soybean	plastid	34.39	22.16
KRH57249	Soybean	plastid	31.9	21.23
KRH03976	Soybean	mitochondrion, nucleus	32.13	21.23

Protein Annotations

EntrezGene:100816249	MapMan:15.5.12	EMBL:ACUP02006779	EnsemblPlantsGene:GLYMA_11G096500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048366
GO:GO:0090610	UniProt:I1LIN3	InterPro:IPR005202	EnsemblPlants:KRH29089	ProteinID:KRH29089	ProteinID:KRH29089.1
EMBL:KT031159	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF35	InterPro:TF_GRAS
UniParc:UPI000233C6AE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:7351204..7353653

Molecular Weight (calculated)

48215.4 Da

IEP (calculated)

5.613

GRAVY (calculated)

-0.131

Length

442 amino acids

Sequence
(BLAST)

001: MLQSLVPRSP RTSNPNAMKT KRAVDAGGDS PADEPSFKRT NFSGEKTTAE AEEEQAFDPE PHGGDSTGLK LLGLLLQCAE CVAMDNLDFA NDLLPEIAEL
101: SSPYGTSPER VGAYFAQALQ ARVVSSCIGS YSPLTAKSVT LTQSQKIFNA FQSYNSVSPL VKFSHFTANQ AIFQALDGED RVHIIDLDIM QGLQWPGLFH
201: ILASRSKKIR SVRITGFGSS SELLDSTGRR LADFASSLGL PFEFFPVEGK IGSVTELSQL GVRPNEAIVV HWMHHCLYDI TGSDLGTLRL LTQLRPKLIT
301: TVEQDLSHAG SFLARFVEAL HYYSALFDAL GDGLGADSLE RHTVEQHLLG CEIRNIVAVG GPKRTGEVKL ERWGDELKRA GFGPVSLRGN PAAQASLLLG
401: MFPWRGYTLV EENGSLKLGW KDLSLLIASA WQPSDLMITY PD

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.