CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57249	Soybean	plastid	90.58	91.27
VIT_02s0025g04000.t01	Wine grape	plastid	65.32	66.62
GSMUA_Achr1P16230_001	Banana	cytosol	32.88	61.8
Solyc08g080400.1.1	Tomato	plastid	61.58	60.68
PGSC0003DMT400007879	Potato	plastid	61.29	60.38
AT1G63100.2	Thale cress	plastid	54.71	55.62
CDY49199	Canola	plastid	51.87	54.91
Bra027620.1-P	Field mustard	plastid	51.42	54.43
CDY70213	Canola	plastid	52.02	54.12
CDY45974	Canola	plastid	52.17	54.11
CDY47352	Canola	plastid	51.42	54.0
Bra026999.1-P	Field mustard	nucleus, plastid	48.28	53.57
GSMUA_Achr7P05850_001	Banana	mitochondrion	47.53	48.92
GSMUA_Achr1P18840_001	Banana	cytosol	44.84	48.86
HORVU7Hr1G010620.1	Barley	cytosol	36.32	43.16
Os06t0127800-01	Rice	plastid	39.46	42.79
TraesCS7D01G053600.1	Wheat	plastid	39.31	41.95
TraesCS4A01G430600.1	Wheat	plastid	38.86	41.87
TraesCS7A01G059000.1	Wheat	plastid	38.86	41.47
Zm00001d045507_P001	Maize	plastid	37.82	41.07
EER87757	Sorghum	mitochondrion	37.67	39.56
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.84	34.8
KRG92263	Soybean	cytosol	20.48	34.34
KRH29015	Soybean	cytosol	14.2	33.33
KRH29089	Soybean	mitochondrion	21.23	32.13
KRH34954	Soybean	cytosol	19.43	32.1
KRH42544	Soybean	cytosol, nucleus, plastid	23.92	30.95
KRH24117	Soybean	plastid	20.48	30.79
KRH63032	Soybean	cytosol	22.87	30.42
KRH54840	Soybean	cytosol	22.87	30.3
KRH58636	Soybean	nucleus	23.47	30.02
KRH34544	Soybean	cytosol	21.82	29.92
KRG91825	Soybean	nucleus	20.48	29.46
KRH08555	Soybean	cytosol	20.48	29.09
KRH62871	Soybean	cytosol	18.98	28.67
KRH29080	Soybean	cytosol	19.43	28.57
KRH70202	Soybean	cytosol	20.33	28.57
KRH24106	Soybean	cytosol, nucleus, peroxisome	19.28	28.35
KRH29971	Soybean	cytosol	18.39	27.83
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	18.98	27.31
KRH19587	Soybean	cytosol	21.23	27.0
KRH27822	Soybean	nucleus, plastid	18.98	26.85
KRH03910	Soybean	cytosol	20.33	26.46
KRH57194	Soybean	cytosol	19.88	26.03
KRH32212	Soybean	cytosol	20.48	25.51
KRH24039	Soybean	cytosol	18.09	25.16
KRG97933	Soybean	nucleus	21.82	25.0
KRH44884	Soybean	cytosol	16.14	24.94
KRH30942	Soybean	cytosol	21.97	24.71
KRH06900	Soybean	plastid	25.11	24.49
KRG94590	Soybean	plastid	24.66	24.23
KRH13057	Soybean	cytosol	20.03	24.14
KRH40615	Soybean	nucleus, plastid	23.32	18.95
KRH00551	Soybean	nucleus, plastid	23.47	18.65

Protein Annotations

EntrezGene:100777890	MapMan:15.5.12	EMBL:ACUP02010370	EnsemblPlantsGene:GLYMA_17G131200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1MUR1	InterPro:IPR005202	EnsemblPlants:KRH03976
ProteinID:KRH03976	ProteinID:KRH03976.1	ProteinID:KRH03977.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF16	InterPro:Scarecrow-like_28	InterPro:TF_GRAS	UniParc:UPI000233E7DC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:10508320..10511779

Molecular Weight (calculated)

74659.8 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.454

Length

669 amino acids

Sequence
(BLAST)

001: MLAGCSSSTL LSPRHRLRSE APAQFQACHF QLPSSMSTQR LDLPSCTTAT FTRNNKDHHH HQPLRPVGLS VDQKHIEAKT STCSLKQHIR LPPLAITASA
101: TPLVEESSII NDNNNKSLKK RLAAEHHDDS FAKRKKSSST TECDWFQPDV VETTTLGGFN NNNTSLVSFS SEEQERVCFL PSEVVSHSAP FPLNPWLESC
201: VTKITNFGEG SHRHPHHHHH PHHHNDHASG SVSNASSESQ SLRLNDNVSE HEVGNGSGNP YYHHRKVEAG EEDDHHGFEL VSLLTGCVDA IGSRNVTAIN
301: HFIAKLGDLA SPKGTTSISR ICAYFTEALA IRVTRLWPHV FHIAAATTSR DMVEDDESAT ALRLLNQVTP IPKFLHFTSN EMLLRAFEGK DRVHIIDFDI
401: KQGLQWPSLF QSLASRSNPP IHVRITGIGE SKQDLNETGE RLAGFAEVLN LPFEFHPVVD RLEDVRLWML HVKEHETVAV NCVSQLHKTL HDGSGGALRD
501: FLGLIRSTKP SVVVVAEQEA EHNHTRLEAR VCNSLKYYSA LFDSIEESGL PIESAVRVKI EEMYGKEIRN IIACEGRERV ERHESFGNWR RMMVEQGGFR
601: CMSVTERELS QSQMLLKMYS CESYSVKKQE KEGATGVTLS WLEQPLYTVS AWGPVDAAAG TSSSFSHPS

Best Arabidopsis Sequence Match ( AT1G63100.2 )
(BLAST)

001: MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFSR KETPSSRPLG RSISLDNSNN NNNKPIERKT KTSGCSLKQN IKLPPLATTR
101: GNGEGFSWNN DNNNRGKSLK RLAEEDESCL SRAKRTKCEN EGGFWFEHFT GQDSSSPALP FSLTCSGDDE EKVCFVPSEV ISQPLPNWVD SVITELAGIG
201: DKDVESSLPA AVKEASGGSS TSASSESRSL SHRVPEPTNG SRNPYSHRGA TEERTTGNIN NNNNRNDLQR DFELVNLLTG CLDAIRSRNI AAINHFIART
301: GDLASPRGRT PMTRLIAYYI EALALRVARM WPHIFHIAPP REFDRTVEDE SGNALRFLNQ VTPIPKFIHF TANEMLLRAF EGKERVHIID FDIKQGLQWP
401: SFFQSLASRI NPPHHVRITG IGESKLELNE TGDRLHGFAE AMNLQFEFHP VVDRLEDVRL WMLHVKEGES VAVNCVMQMH KTLYDGTGAA IRDFLGLIRS
501: TNPIALVLAE QEAEHNSEQL ETRVCNSLKY YSAMFDAIHT NLATDSLMRV KVEEMLFGRE IRNIVACEGS HRQERHVGFR HWRRMLEQLG FRSLGVSERE
601: VLQSKMLLRM YGSDNEGFFN VERSDEDNGG EGGRGGGVTL RWSEQPLYTI SAWTTGGN

Arabidopsis Description

SCL28Scarecrow-like protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.