Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30942 | Soybean | cytosol | 92.98 | 91.26 |
| VIT_14s0006g00640.t01 | Wine grape | cytosol | 66.61 | 68.37 |
| Bra039762.1-P | Field mustard | cytosol | 56.68 | 67.83 |
| AT1G66350.1 | Thale cress | cytosol | 58.9 | 67.32 |
| CDY55037 | Canola | cytosol | 58.39 | 67.26 |
| CDY70426 | Canola | cytosol | 58.22 | 67.06 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 58.39 | 65.96 |
| AT3G03450.1 | Thale cress | nucleus | 60.96 | 65.08 |
| KRH58636 | Soybean | nucleus | 58.22 | 65.01 |
| Solyc11g011260.1.1 | Tomato | nucleus | 65.07 | 64.63 |
| PGSC0003DMT400040589 | Potato | nucleus | 64.9 | 64.46 |
| Bra031991.1-P | Field mustard | cytosol, nucleus, plastid | 55.14 | 63.76 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 57.02 | 63.43 |
| CDY38434 | Canola | cytosol | 55.31 | 63.33 |
| Bra013973.1-P | Field mustard | cytosol | 56.68 | 63.05 |
| AT5G17490.1 | Thale cress | cytosol | 55.65 | 62.14 |
| CDY43122 | Canola | nucleus | 39.55 | 55.4 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 39.04 | 54.81 |
| KRG92263 | Soybean | cytosol | 35.62 | 52.13 |
| KRH34544 | Soybean | cytosol | 41.78 | 50.0 |
| KRH54840 | Soybean | cytosol | 42.98 | 49.7 |
| KRH63032 | Soybean | cytosol | 42.64 | 49.5 |
| KRH29015 | Soybean | cytosol | 17.64 | 36.14 |
| KRH29089 | Soybean | mitochondrion | 23.46 | 31.0 |
| KRH34954 | Soybean | cytosol | 21.06 | 30.37 |
| KRH29080 | Soybean | cytosol | 23.29 | 29.89 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 22.77 | 29.23 |
| KRH57194 | Soybean | cytosol | 25.34 | 28.96 |
| KRH62871 | Soybean | cytosol | 21.92 | 28.89 |
| KRH29971 | Soybean | cytosol | 21.75 | 28.73 |
| KRH44884 | Soybean | cytosol | 21.23 | 28.64 |
| KRH24117 | Soybean | plastid | 21.75 | 28.54 |
| KRH03910 | Soybean | cytosol | 25.0 | 28.4 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 22.43 | 28.17 |
| KRG91825 | Soybean | nucleus | 22.26 | 27.96 |
| KRH13057 | Soybean | cytosol | 26.54 | 27.93 |
| KRH27822 | Soybean | nucleus, plastid | 22.43 | 27.7 |
| KRG94590 | Soybean | plastid | 32.19 | 27.61 |
| KRH70202 | Soybean | cytosol | 22.43 | 27.52 |
| KRH08555 | Soybean | cytosol | 21.92 | 27.18 |
| KRH06900 | Soybean | plastid | 31.85 | 27.11 |
| KRH24039 | Soybean | cytosol | 22.26 | 27.03 |
| KRH19587 | Soybean | cytosol | 22.95 | 25.48 |
| KRH32212 | Soybean | cytosol | 22.43 | 24.39 |
| KRH03976 | Soybean | mitochondrion, nucleus | 25.0 | 21.82 |
| KRH57249 | Soybean | plastid | 24.49 | 21.54 |
| KRH40615 | Soybean | nucleus, plastid | 27.57 | 19.56 |
| KRH00551 | Soybean | nucleus, plastid | 27.57 | 19.12 |
Protein Annotations
| Gene3D:1.10.10.1290 | EntrezGene:100799695 | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 | ProteinID:ACJ61497.1 |
| EMBL:ACUP02010826 | ncoils:Coil | InterPro:DELLA_N_sf | EnsemblPlantsGene:GLYMA_18G040000 | GO:GO:0000003 | GO:GO:0000989 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 |
| GO:GO:0009791 | GO:GO:0009863 | GO:GO:0009867 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010187 |
| GO:GO:0042538 | GO:GO:0043565 | GO:GO:2000033 | GO:GO:2000377 | UniProt:I1MZE2 | InterPro:IPR005202 |
| InterPro:IPR038088 | EnsemblPlants:KRG97933 | ProteinID:KRG97933 | ProteinID:KRG97933.1 | PFAM:PF03514 | PFAM:PF12041 |
| PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | SMART:SM01129 | InterPro:TF_DELLA | InterPro:TF_DELLA_N |
| InterPro:TF_GRAS | UniParc:UPI000211BB00 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr18:-:3278869..3281985
Molecular Weight (calculated)
63892.6 Da
IEP (calculated)
5.003
GRAVY (calculated)
-0.318
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDHRDSCG GGGGGSVKGE CSSMPSNGKA NMWEEQQQQQ QGMDELLAAL GYKVRASDMA DVAQKLEQLE MVMGCAQEEG ISHLASDTVH YDPTDLYSWV
101: QTMLTELNPE PNNNNNSLLG PSSLLIDNNT APVFNDDSEY DLRAIPGIAA YPPPPPQDNN NNNNNLDEIE TANNINKRLK PSPVESADSA SEPTRTVLLV
201: DHQEAGVRLV HTLLACAEAV QQENLKLADA LVKHVGILAA SQAGAMRKVA SYFAQALARR IYGIFPEETL DSSFSDVLHM HFYESCPYLK FAHFTANQAI
301: LEAFATAGRV HVIDFGLRQG MQWPALMQAL ALRPGGPPTF RLTGIGPPQP DNTDALQQVG WKLAQLAQNI GVQFEFRGFV CNSLADLDPK MLEIRPGEAV
401: AVNSVFELHR MLARPGSVDK VLDTVKKIKP KIVTIVEQEA NHNGPGFLDR FTEALHYYSS LFDSLEGSSS STGLGSPNQD LLMSELYLGR QICNVVANEG
501: ADRVERHETL SQWRGRLDSA GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLIATS AWKLPSPNDL HCKL
101: QTMLTELNPE PNNNNNSLLG PSSLLIDNNT APVFNDDSEY DLRAIPGIAA YPPPPPQDNN NNNNNLDEIE TANNINKRLK PSPVESADSA SEPTRTVLLV
201: DHQEAGVRLV HTLLACAEAV QQENLKLADA LVKHVGILAA SQAGAMRKVA SYFAQALARR IYGIFPEETL DSSFSDVLHM HFYESCPYLK FAHFTANQAI
301: LEAFATAGRV HVIDFGLRQG MQWPALMQAL ALRPGGPPTF RLTGIGPPQP DNTDALQQVG WKLAQLAQNI GVQFEFRGFV CNSLADLDPK MLEIRPGEAV
401: AVNSVFELHR MLARPGSVDK VLDTVKKIKP KIVTIVEQEA NHNGPGFLDR FTEALHYYSS LFDSLEGSSS STGLGSPNQD LLMSELYLGR QICNVVANEG
501: ADRVERHETL SQWRGRLDSA GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLIATS AWKLPSPNDL HCKL
001: MKRGYGETWD PPPKPLPASR SGEGPSMADK KKADDDNNNS NMDDELLAVL GYKVRSSEMA EVAQKLEQLE MVLSNDDVGS TVLNDSVHYN PSDLSNWVES
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
101: MLSELNNPAS SDLDTTRSCV DRSEYDLRAI PGLSAFPKEE EVFDEEASSK RIRLGSWCES SDESTRSVVL VDSQETGVRL VHALVACAEA IHQENLNLAD
201: ALVKRVGTLA GSQAGAMGKV ATYFAQALAR RIYRDYTAET DVCAAVNPSF EEVLEMHFYE SCPYLKFAHF TANQAILEAV TTARRVHVID LGLNQGMQWP
301: ALMQALALRP GGPPSFRLTG IGPPQTENSD SLQQLGWKLA QFAQNMGVEF EFKGLAAESL SDLEPEMFET RPESETLVVN SVFELHRLLA RSGSIEKLLN
401: TVKAIKPSIV TVVEQEANHN GIVFLDRFNE ALHYYSSLFD SLEDSYSLPS QDRVMSEVYL GRQILNVVAA EGSDRVERHE TAAQWRIRMK SAGFDPIHLG
501: SSAFKQASML LSLYATGDGY RVEENDGCLM IGWQTRPLIT TSAWKLA
Arabidopsis Description
RGL2RGL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VH73]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.