Factsheet for Bra039762.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001477.1-P
Bra003520.1-P
Bra007722.1-P
Bra009970.1-P
Bra012532.1-P
Bra013423.1-P
Bra027588.1-P
Bra028364.1-P
Bra034718.1-P
Bra035092.1-P
Bra039354.1-P
Bra039460.1-P
Bra039533.1-P
Bra040420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66350.1	Bra035092.1-P	AT1G79110.1	23482857
AT1G66350.1	Bra039460.1-P	AT3G05120.1	16709201
AT1G66350.1	Bra039460.1-P	AT3G05120.1	19500306
AT1G66350.1	Bra001477.1-P	AT3G12920.1	23482857
AT1G66350.1	Bra034718.1-P	AT3G12920.1	23482857
AT1G66350.1	Bra039354.1-P	AT3G12920.1	23482857
AT1G66350.1	Bra003520.1-P	AT3G63010.1	16709201
AT1G66350.1	Bra007722.1-P	AT3G63010.1	16709201
AT1G66350.1	Bra040420.1-P	AT3G63010.1	16709201
AT1G66350.1	Bra003520.1-P	AT3G63010.1	19500306
AT1G66350.1	Bra007722.1-P	AT3G63010.1	19500306
AT1G66350.1	Bra040420.1-P	AT3G63010.1	19500306
AT1G66350.1	Bra012532.1-P	AT4G19700.1	23482857
AT1G66350.1	Bra013423.1-P	AT4G19700.1	23482857
AT1G66350.1	Bra009970.1-P	AT5G27320.1	16709201
AT1G66350.1	Bra009970.1-P	AT5G27320.1	19500306
AT1G66350.1	Bra027588.1-P	AT5G45100.1	23482857
AT1G66350.1	Bra028364.1-P	AT5G45100.1	23482857
AT1G66350.1	Bra039533.1-P	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70426	Canola	cytosol	99.8	96.06
AT1G66350.1	Thale cress	cytosol	86.68	82.78
Bra013973.1-P	Field mustard	cytosol	63.93	59.43
VIT_14s0006g00640.t01	Wine grape	cytosol	68.65	58.88
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	60.45	58.42
KRG97933	Soybean	nucleus	67.83	56.68
KRH30942	Soybean	cytosol	68.24	55.97
Solyc11g011260.1.1	Tomato	nucleus	65.57	54.42
PGSC0003DMT400040589	Potato	nucleus	65.37	54.25
Bra024875.1-P	Field mustard	nucleus	62.7	53.4
Bra017443.1-P	Field mustard	cytosol	58.2	51.92
Bra007056.1-P	Field mustard	mitochondrion, plastid	23.57	36.39
Bra014251.1-P	Field mustard	cytosol	30.53	33.48
Bra018848.1-P	Field mustard	cytosol	29.71	32.95
Bra025456.1-P	Field mustard	mitochondrion	16.39	32.52
Bra012102.1-P	Field mustard	cytosol	10.86	31.55
Bra038002.1-P	Field mustard	nucleus, plastid	26.02	28.67
Bra027620.1-P	Field mustard	plastid	29.71	22.94
Bra026999.1-P	Field mustard	nucleus, plastid	27.25	22.06

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	EnsemblPlantsGene:Bra039762	EnsemblPlants:Bra039762.1
EnsemblPlants:Bra039762.1-P	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009739	GO:GO:0009938	GO:GO:0009987	InterPro:IPR005202	InterPro:IPR038088	UniProt:M4FF90
PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	SMART:SM01129
InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI0002545B24	SEG:seg	:

Description

AT1G66350 (E=6e-231) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor

Coordinates

chrA02:+:9841144..9842610

Molecular Weight (calculated)

53892.0 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.117

Length

488 amino acids

Sequence
(BLAST)

001: MTANKEEAGG FDELLVVLGY KVRSSDMADV AHKLEQLEMV LDDGNSHLSD DTVHYNPSDL SGWVDSLLFD LNPTCDQVIP DQDSEYELSA IPGSAAYPRG
101: KRTRTGSDSS TTRSMVVLDS QETGVRLVHA LLACAEAVQQ NNLKLADVLV KHVGLLASSQ AGAMRKVATY FAEGLARRIY RIYPRDDVGL SSFSDTLQIH
201: FYECCPYLKF AHFTANQAIL EAFATAEKVH VIDLGINQGL QWPALIQALA LRPGGPPDFR LTGIGSSLTG QSIQEVGWKL GQLANAVGVN FEFKSIVLNS
301: LSDLKQEMLE IRTGSESIAV NSVFELHRLL AHPGSIDNIL LTIKSIKPDI ITVVEQEADH NGAVFFDRFT ESLHYYSSLF DSLEGPPSQD RVMSELYLGR
401: QILNLVACEG EDRVERHETL AQWRNRFTMG GFKSVSIGSY AYKQASMLLA LYAGADGYKV EENEGCLLLG WQTRPLIATS AWRFNRVE

Best Arabidopsis Sequence Match ( AT1G66350.1 )
(BLAST)

001: MKREHNHRES SAGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPTRIQEKP
101: DSEYDLRAIP GSAVYPRDEH VTRRSKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQNNLKL ADALVKHVGL LASSQAGAMR KVATYFAEGL
201: ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA NQAILEVFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG YSLTDIQEVG
301: WKLGQLASTI GVNFEFKSIA LNNLSDLKPE MLDIRPGLES VAVNSVFELH RLLAHPGSID KFLSTIKSIR PDIMTVVEQE ANHNGTVFLD RFTESLHYYS
401: SLFDSLEGPP SQDRVMSELF LGRQILNLVA CEGEDRVERH ETLNQWRNRF GLGGFKPVSI GSNAYKQASM LLALYAGADG YNVEENEGCL LLGWQTRPLI
501: ATSAWRINRV E

Arabidopsis Description

RGL1DELLA protein RGL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.