Factsheet for Bra009970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013776.1-P
Bra017443.1-P
Bra024875.1-P
Bra031991.1-P
Bra039762.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27320.1	Bra039762.1-P	AT1G66350.1	16709201
AT5G27320.1	Bra039762.1-P	AT1G66350.1	19500306
AT5G27320.1	Bra017443.1-P	AT2G01570.1	16709201
AT5G27320.1	Bra024875.1-P	AT2G01570.1	16709201
AT5G27320.1	Bra017443.1-P	AT2G01570.1	17194763
AT5G27320.1	Bra024875.1-P	AT2G01570.1	17194763
AT5G27320.1	Bra017443.1-P	AT2G01570.1	19500306
AT5G27320.1	Bra024875.1-P	AT2G01570.1	19500306
AT5G27320.1	Bra031991.1-P	AT3G03450.1	16709201
AT5G27320.1	Bra031991.1-P	AT3G03450.1	19500306
AT5G27320.1	Bra013776.1-P	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16687	Canola	cytosol	99.42	99.42
CDX80665	Canola	cytosol	98.55	98.84
AT5G27320.1	Thale cress	cytosol	92.17	92.44
KRH33997	Soybean	cytosol	77.97	78.2
KRG92803	Soybean	cytosol	77.39	77.62
Solyc01g098390.2.1	Tomato	cytosol	76.23	75.36
PGSC0003DMT400073501	Potato	cytosol	75.94	75.29
VIT_14s0030g00440.t01	Wine grape	cytosol	80.0	73.21
GSMUA_Achr3P24930_001	Banana	cytosol	63.19	71.24
Bra039460.1-P	Field mustard	cytosol	80.87	70.45
GSMUA_Achr8P05910_001	Banana	cytosol	60.87	68.85
GSMUA_Achr5P27430_001	Banana	cytosol	61.45	68.83
Bra003520.1-P	Field mustard	cytosol	71.3	68.72
Bra007722.1-P	Field mustard	cytosol	71.01	68.44
GSMUA_Achr10P...	Banana	cytosol	61.45	68.39
Bra040420.1-P	Field mustard	cytosol	71.01	68.06
GSMUA_Achr6P16090_001	Banana	cytosol	60.29	67.75
GSMUA_Achr5P27450_001	Banana	mitochondrion	62.03	63.31
Os05t0407500-01	Rice	cytosol, nucleus	63.77	62.15
Zm00001d010308_P001	Maize	cytosol, plastid	62.9	62.0
KXG21982	Sorghum	cytosol	63.48	61.69
TraesCS1B01G265900.1	Wheat	cytosol	62.9	61.13
TraesCS1A01G255100.1	Wheat	cytosol	62.9	61.13
Zm00001d038165_P003	Maize	cytosol	62.03	60.97
HORVU1Hr1G060810.1	Barley	cytosol	62.32	60.73
TraesCS1D01G254500.1	Wheat	cytosol	61.74	60.17
Bra026494.1-P	Field mustard	cytosol	37.68	38.81
Bra009691.1-P	Field mustard	cytosol	36.23	37.31
Bra005899.1-P	Field mustard	cytosol	29.57	30.54
Bra004026.1-P	Field mustard	cytosol	28.7	30.18
Bra009207.1-P	Field mustard	cytosol	28.99	30.12
Bra035904.1-P	Field mustard	cytosol	27.54	28.96
Bra008651.1-P	Field mustard	cytosol	27.54	28.61
Bra029278.1-P	Field mustard	cytosol	26.67	28.57
Bra004327.1-P	Field mustard	cytosol	27.54	28.44
Bra004326.1-P	Field mustard	cytosol	27.54	28.44
Bra027693.1-P	Field mustard	cytosol	27.25	27.89
Bra038363.1-P	Field mustard	cytosol	27.25	27.89
Bra004924.1-P	Field mustard	cytosol	25.8	27.47
Bra004925.1-P	Field mustard	cytosol	25.51	27.16
Bra029276.1-P	Field mustard	cytosol	21.16	26.74

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	EnsemblPlantsGene:Bra009970	EnsemblPlants:Bra009970.1
EnsemblPlants:Bra009970.1-P	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009719	GO:GO:0009739
GO:GO:0009791	GO:GO:0009908	GO:GO:0009939	GO:GO:0009987	GO:GO:0010476	GO:GO:0010629
GO:GO:0016787	GO:GO:0048444	GO:GO:0048530	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS
UniProt:M4D0H2	PFAM:PF07859	ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227
SUPFAM:SSF53474	UniParc:UPI000253F514	:	:	:	:

Description

AT5G27320 (E=5e-187) ATGID1C, GID1C | GID1C (GA INSENSITIVE DWARF1C); hydrolase

Coordinates

chrA06:-:18385852..18387542

Molecular Weight (calculated)

38505.8 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.171

Length

345 amino acids

Sequence
(BLAST)

001: MAGSDQVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVIM DRQTNLLSRV YRPAYAGGDP PSFTDLQKPV
101: DGEVVPVIVF FHGGSFVHSS ANSAIYDTLC RRLVGLCGFV VVSVNYRRAP ENRYPCAYDD GWTALNWVNS RPWLQSKKDS KVHIFLAGDS SGGNIAHNVA
201: VRAVESGIGV LGNILLNPMF GGTERTESET RLDGKYFVTV RDRDWYWRAF LPEGEDREHP ACSPFGPKSK SLEGLSFPKS LVVVAGLDLI QDWQLKYAEG
301: LKRAGQEVKL LYLDQATIGF YLLPNNNHFH TVMEEIAAFV NAECQ

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.