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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER93592
OQU85206

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05120.1 EER93592 AT1G14920.1 16709201
AT3G05120.1 EER93592 AT1G14920.1 17194763
AT3G05120.1 EER93592 AT1G14920.1 17416730
AT3G05120.1 EER93592 AT1G14920.1 18827182
AT3G05120.1 EER93592 AT1G14920.1 19500306
AT3G05120.1 EER93592 AT2G01570.1 16709201
AT3G05120.1 EER93592 AT2G01570.1 17194763
AT3G05120.1 EER93592 AT2G01570.1 17416730
AT3G05120.1 EER93592 AT2G01570.1 19500306
AT3G05120.1 OQU85206 AT4G24210.1 16709201
AT3G05120.1 OQU85206 AT4G24210.1 19500306
AT3G63010.1 EER93592 AT1G14920.1 16709201
AT3G63010.1 EER93592 AT1G14920.1 17194763
AT3G63010.1 EER93592 AT1G14920.1 18827182
AT3G63010.1 EER93592 AT1G14920.1 19500306
AT3G63010.1 EER93592 AT2G01570.1 16709201
AT3G63010.1 EER93592 AT2G01570.1 17194763
AT3G63010.1 EER93592 AT2G01570.1 18827182
AT3G63010.1 EER93592 AT2G01570.1 19429606
AT3G63010.1 EER93592 AT2G01570.1 19500306
AT3G63010.1 OQU85206 AT4G24210.1 16709201
AT3G63010.1 OQU85206 AT4G24210.1 19500306
AT5G27320.1 EER93592 AT1G14920.1 16709201
AT5G27320.1 EER93592 AT1G14920.1 17194763
AT5G27320.1 EER93592 AT1G14920.1 18827182
AT5G27320.1 EER93592 AT1G14920.1 19500306
AT5G27320.1 EER93592 AT2G01570.1 16709201
AT5G27320.1 EER93592 AT2G01570.1 17194763
AT5G27320.1 EER93592 AT2G01570.1 19500306
AT5G27320.1 OQU85206 AT4G24210.1 19500306
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038165_P003 Maize cytosol 94.65 95.73
Os05t0407500-01 Rice cytosol, nucleus 83.38 83.62
TraesCS1A01G255100.1 Wheat cytosol 83.1 83.1
TraesCS1B01G265900.1 Wheat cytosol 83.1 83.1
TraesCS1D01G254500.1 Wheat cytosol 82.82 83.05
HORVU1Hr1G060810.1 Barley cytosol 82.82 83.05
GSMUA_Achr3P24930_001 Banana cytosol 60.28 69.93
GSMUA_Achr5P27430_001 Banana cytosol 60.0 69.16
GSMUA_Achr6P16090_001 Banana cytosol 59.72 69.06
GSMUA_Achr10P... Banana cytosol 60.28 69.03
GSMUA_Achr8P05910_001 Banana cytosol 58.59 68.2
AT5G27320.1 Thale cress cytosol 61.97 63.95
CDX80665 Canola cytosol 61.69 63.66
GSMUA_Achr5P27450_001 Banana mitochondrion 60.56 63.61
Bra009970.1-P Field mustard cytosol 61.69 63.48
CDY16687 Canola cytosol 61.41 63.19
AT3G05120.1 Thale cress cytosol 60.85 62.61
CDY27795 Canola cytosol 60.85 62.43
VIT_07s0104g00930.t01 Wine grape cytosol 60.0 61.92
CDY41936 Canola cytosol 60.28 61.67
Solyc06g008870.2.1 Tomato cytosol 59.44 61.16
KRH71503 Soybean cytosol 58.87 61.11
KRG92803 Soybean cytosol 59.15 61.05
KRH31953 Soybean cytosol 58.87 60.93
PGSC0003DMT400056562 Potato cytosol 59.15 60.87
KRH33997 Soybean cytosol 58.87 60.76
PGSC0003DMT400009831 Potato cytosol 58.87 60.58
PGSC0003DMT400073501 Potato cytosol 59.15 60.34
Solyc01g098390.2.1 Tomato cytosol 58.59 59.6
Solyc09g074270.2.1 Tomato cytosol 57.46 59.13
CDY67478 Canola cytosol 59.44 58.94
CDY63333 Canola cytosol 59.15 58.66
Bra007722.1-P Field mustard cytosol 58.59 58.1
KRH67123 Soybean cytosol 56.62 58.09
VIT_14s0030g00440.t01 Wine grape cytosol 61.13 57.56
CDX89165 Canola cytosol 58.31 57.5
AT3G63010.1 Thale cress cytosol 57.75 57.26
Bra003520.1-P Field mustard cytosol 57.75 57.26
CDX67913 Canola cytosol 57.75 57.26
CDY70667 Canola cytosol 57.46 56.98
Bra040420.1-P Field mustard cytosol 57.75 56.94
CDX93945 Canola extracellular, golgi 55.21 55.06
Bra039460.1-P Field mustard cytosol 60.85 54.55
EES08278 Sorghum plastid 34.65 35.14
OQU90362 Sorghum mitochondrion, plastid 32.11 34.76
KXG36805 Sorghum cytosol 32.96 33.52
EES08277 Sorghum plastid 33.24 33.05
EER97518 Sorghum plastid 31.83 32.75
EER99798 Sorghum plastid 31.55 31.46
OQU86289 Sorghum cytosol 28.45 31.17
EER90762 Sorghum cytosol 28.73 30.72
OQU88480 Sorghum cytosol 28.17 30.58
OQU90360 Sorghum mitochondrion 31.55 30.27
OQU88478 Sorghum cytosol 28.17 30.21
EER98020 Sorghum cytosol 29.01 29.43
EES00296 Sorghum cytosol 28.17 29.41
EER98018 Sorghum cytosol 27.89 29.38
EER98685 Sorghum cytosol 27.89 29.2
EES00295 Sorghum mitochondrion, plastid 21.41 28.57
EER95897 Sorghum cytosol 29.3 28.34
EER98021 Sorghum cytosol, extracellular, peroxisome 28.73 27.64
EES14122 Sorghum cytosol 26.48 27.57
EER95156 Sorghum mitochondrion 27.32 26.08
EES18227 Sorghum cytosol 26.2 25.69
EES18228 Sorghum cytosol 25.92 25.34
EER92547 Sorghum cytosol 23.1 24.77
EES09618 Sorghum endoplasmic reticulum, vacuole 25.92 24.53
OQU79889 Sorghum cytosol 18.59 24.44
OQU86288 Sorghum mitochondrion 25.07 21.65
Protein Annotations
MapMan:11.6.2.1Gene3D:3.40.50.1820InterPro:AB_hydrolaseInterPro:AB_hydrolase_3UniProt:B0S4S8EMBL:BN001196
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0008289
GO:GO:0010331GO:GO:0016787InterPro:IPR029058EnsemblPlants:KXG21982ProteinID:KXG21982ProteinID:KXG21982.1
InterPro:Lipase_GDXG_HIS_ASInterPro:Lipase_GDXG_put_SER_ASPFAM:PF07859ScanProsite:PS01173ScanProsite:PS01174PANTHER:PTHR23024
PANTHER:PTHR23024:SF227EnsemblPlantsGene:SORBI_3009G134600SUPFAM:SSF53474UniParc:UPI00016D3864SEG:seg:
Description
hypothetical protein
Coordinates
chr9:+:48955739..48958993
Molecular Weight (calculated)
39266.3 Da
IEP (calculated)
6.949
GRAVY (calculated)
-0.294
Length
355 amino acids
Sequence
(BLAST)
001: MAGSDEVNRN ECKGAVPIHT WVLISNFKLA YNMLRRADGT FDRDLAEFLD RRVPPDARAQ EGVSSFDHVI DTSTGLEVRI YRAAAAAANN NGGAAAVTLP
101: ILDFLAGAPS PDPFPVILFF HGGSFAHSSS GTAIYDNLCR RFVKLSKGVV VSVNYRRAPE HRYPCAYDDG WTALKWAMSQ PFLRSGRGGD ARPRVFLSGD
201: SSGGNIAHHV AVRAADAGIN ICGNILLNAM FGGTERTESE RRLDGKYFVT LQDRDWYWKA YLPEDADRDH PACNPFGPNG RRLRGLPFTK SLIIVSGLDL
301: TCDRQLAYAE GLQEDGHHAK LVYREKATVG FYLLPNTDHY HEVMEEIADF LRANL
Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)
001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
Arabidopsis Description
GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.