CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592
EES04173
KXG21982

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24210.1	EER93592	AT1G14920.1	15155881
AT4G24210.1	EER93592	AT1G14920.1	15161962
AT4G24210.1	EER93592	AT1G14920.1	17194763
AT4G24210.1	EER93592	AT2G01570.1	15155881
AT4G24210.1	EER93592	AT2G01570.1	15161962
AT4G24210.1	EER93592	AT2G01570.1	17194763
AT4G24210.1	KXG21982	AT3G05120.1	17194763
AT4G24210.1	KXG21982	AT3G05120.1	19500306
AT4G24210.1	KXG21982	AT3G63010.1	16709201
AT4G24210.1	KXG21982	AT3G63010.1	19500306
AT4G24210.1	EES04173	AT4G02570.1	15161962
AT4G24210.1	KXG21982	AT5G27320.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016973_P001	Maize	nucleus	65.54	74.15
TraesCS3A01G055700.1	Wheat	nucleus	43.82	53.92
TraesCS3B01G068100.1	Wheat	nucleus	44.19	53.88
GSMUA_Achr9P22610_001	Banana	cytosol, nucleus, plastid	27.34	44.79
Zm00001d050903_P001	Maize	cytosol	57.3	40.05
KRH15421	Soybean	cytosol	20.97	38.89
CDY03475	Canola	nucleus	20.22	36.99
Bra013776.1-P	Field mustard	nucleus	19.85	36.3
CDY34266	Canola	nucleus	19.85	36.3
KRH52046	Soybean	cytosol	23.6	36.21
KRH05620	Soybean	cytosol	23.22	35.63
VIT_07s0129g01000.t01	Wine grape	cytosol	24.34	35.33
AT4G24210.1	Thale cress	cytosol	19.48	34.44
KRH61359	Soybean	cytosol	23.22	33.88
VIT_18s0001g09700.t01	Wine grape	nucleus	22.47	32.61
PGSC0003DMT400008560	Potato	nucleus	20.22	26.09
Solyc04g078390.1.1	Tomato	cytosol, mitochondrion, nucleus	20.97	25.93
OQU93068	Sorghum	cytosol	17.23	22.89

Protein Annotations

EnsemblPlants:OQU85206	EnsemblPlantsGene:SORBI_3004G192400	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	PFAM:PF00646
ProteinID:OQU85206	ProteinID:OQU85206.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI000B42576F	UniProt:A0A1Z5RPA8
MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:54436361..54437911

Molecular Weight (calculated)

28316.5 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.626

Length

267 amino acids

Sequence
(BLAST)

001: MPTAELWLIR SSSQAAADPR ARGCAESPAM KCRSDSSGGG DDPRPPPPAA TGVGGSPSGE PSKKQRTEEP PPGSSVAGEC SSSSTQAPLA PLLPQEARVG
101: DPAPPPPPGP ESGGGEQVMR VPDLGEDLVF EVLMRAEART LAAAACVSRG WRVLARDERL WEAACVRDWA YTGSSEQMLR TVVLSLGGFR RLHEMYIRPV
201: QQRAAGAPPP GQQQRRQLPV RMGRDQVQVS LSLLSTSFFL NMPNAPPPPP PKDKDKDRDK NGGGQCG

Best Arabidopsis Sequence Match ( AT4G24210.1 )
(BLAST)

001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K

Arabidopsis Description

GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.