Factsheet for VIT_18s0001g09700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05260.t01
VIT_07s0104g00930.t01
VIT_14s0030g00440.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24210.1	VIT_01s0011g05260.t01	AT1G14920.1	15155881
AT4G24210.1	VIT_01s0011g05260.t01	AT1G14920.1	15161962
AT4G24210.1	VIT_01s0011g05260.t01	AT1G14920.1	17194763
AT4G24210.1	VIT_01s0011g05260.t01	AT2G01570.1	15155881
AT4G24210.1	VIT_01s0011g05260.t01	AT2G01570.1	15161962
AT4G24210.1	VIT_01s0011g05260.t01	AT2G01570.1	17194763
AT4G24210.1	VIT_14s0030g00440.t01	AT3G05120.1	17194763
AT4G24210.1	VIT_14s0030g00440.t01	AT3G05120.1	19500306
AT4G24210.1	VIT_07s0104g00930.t01	AT3G63010.1	16709201
AT4G24210.1	VIT_07s0104g00930.t01	AT3G63010.1	19500306
AT4G24210.1	VIT_14s0030g00440.t01	AT5G27320.1	19500306
AT4G24210.1	VIT_18s0001g14860.t01	AT5G42190.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03475	Canola	nucleus	52.72	66.44
Bra013776.1-P	Field mustard	nucleus	52.17	65.75
CDY34266	Canola	nucleus	52.17	65.75
AT4G24210.1	Thale cress	cytosol	51.09	62.25
KRH52046	Soybean	cytosol	57.07	60.34
VIT_07s0129g01000.t01	Wine grape	cytosol	60.33	60.33
KRH15421	Soybean	cytosol	46.2	59.03
KRH61359	Soybean	cytosol	56.52	56.83
KRH05620	Soybean	cytosol	50.0	52.87
GSMUA_Achr9P22610_001	Banana	cytosol, nucleus, plastid	41.85	47.24
PGSC0003DMT400008560	Potato	nucleus	48.91	43.48
Solyc04g078390.1.1	Tomato	cytosol, mitochondrion, nucleus	50.54	43.06
VIT_12s0057g00720.t01	Wine grape	cytosol	26.63	28.82
TraesCS3A01G055700.1	Wheat	nucleus	33.7	28.57
TraesCS3B01G068100.1	Wheat	nucleus	33.15	27.85
Zm00001d016973_P001	Maize	nucleus	34.24	26.69
OQU85206	Sorghum	nucleus, plastid	32.61	22.47
Zm00001d050903_P001	Maize	cytosol	33.7	16.23

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100266007	wikigene:100266007	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	MapMan:19.2.2.8.1.4.6
ProteinID:CCB45788	ProteinID:CCB45788.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6GZW7	EMBL:FN595227
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009845
GO:GO:0010162	GO:GO:0019005	InterPro:IPR001810	EMBL:KY765606	EMBL:KY765607	EMBL:KY765608
EntrezGene:LOC100266007	wikigene:LOC100266007	PFAM:PF00646	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	SMART:SM00256
SUPFAM:SSF81383	TIGR:TC51749	UniParc:UPI000210A33A	ArrayExpress:VIT_18s0001g09700	EnsemblPlantsGene:VIT_18s0001g09700	EnsemblPlants:VIT_18s0001g09700.t01
unigene:Vvi.603	RefSeq:XP_002285053	RefSeq:XP_002285053.2	SEG:seg	:	:

Description

SLEEPY1b [Source:UniProtKB/TrEMBL;Acc:F6GZW7]

Coordinates

chr18:+:8077244..8078167

Molecular Weight (calculated)

21013.9 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.599

Length

184 amino acids

Sequence
(BLAST)

001: MKRPFVADDD LESADQKMKN PKLEDDEEDG EVRGETTGFV NLDENLLYEV LKHVDARTLA IAGCVSKLWH RTSQDERLWE LICTRHWANI GCGNQQVRSV
101: VLALGGFRRL HSLYLWPLSK PQASSSSSPP SSSWPSTALS PPFAPHSMMR PKFPTRWGKD EVHLSLSLLS IRYYEKMNFN NRGR

Best Arabidopsis Sequence Match ( AT4G24210.1 )
(BLAST)

001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K

Arabidopsis Description

GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.