Factsheet for TraesCS3B01G068100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G255100.1
TraesCS1B01G265900.1
TraesCS1D01G254500.1
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24210.1	TraesCS4A01G271000.1	AT1G14920.1	15155881
AT4G24210.1	TraesCS4A01G466700.1	AT1G14920.1	15155881
AT4G24210.1	TraesCS4B01G043100.1	AT1G14920.1	15155881
AT4G24210.1	TraesCS4D01G040400.1	AT1G14920.1	15155881
AT4G24210.1	TraesCS4A01G271000.1	AT1G14920.1	15161962
AT4G24210.1	TraesCS4A01G466700.1	AT1G14920.1	15161962
AT4G24210.1	TraesCS4B01G043100.1	AT1G14920.1	15161962
AT4G24210.1	TraesCS4D01G040400.1	AT1G14920.1	15161962
AT4G24210.1	TraesCS4A01G271000.1	AT1G14920.1	17194763
AT4G24210.1	TraesCS4A01G466700.1	AT1G14920.1	17194763
AT4G24210.1	TraesCS4B01G043100.1	AT1G14920.1	17194763
AT4G24210.1	TraesCS4D01G040400.1	AT1G14920.1	17194763
AT4G24210.1	TraesCS4A01G271000.1	AT2G01570.1	15155881
AT4G24210.1	TraesCS4A01G466700.1	AT2G01570.1	15155881
AT4G24210.1	TraesCS4B01G043100.1	AT2G01570.1	15155881
AT4G24210.1	TraesCS4D01G040400.1	AT2G01570.1	15155881
AT4G24210.1	TraesCS4A01G271000.1	AT2G01570.1	15161962
AT4G24210.1	TraesCS4A01G466700.1	AT2G01570.1	15161962
AT4G24210.1	TraesCS4B01G043100.1	AT2G01570.1	15161962
AT4G24210.1	TraesCS4D01G040400.1	AT2G01570.1	15161962
AT4G24210.1	TraesCS4A01G271000.1	AT2G01570.1	17194763
AT4G24210.1	TraesCS4A01G466700.1	AT2G01570.1	17194763
AT4G24210.1	TraesCS4B01G043100.1	AT2G01570.1	17194763
AT4G24210.1	TraesCS4D01G040400.1	AT2G01570.1	17194763
AT4G24210.1	TraesCS1A01G255100.1	AT3G05120.1	17194763
AT4G24210.1	TraesCS1B01G265900.1	AT3G05120.1	17194763
AT4G24210.1	TraesCS1D01G254500.1	AT3G05120.1	17194763
AT4G24210.1	TraesCS1A01G255100.1	AT3G05120.1	19500306
AT4G24210.1	TraesCS1B01G265900.1	AT3G05120.1	19500306
AT4G24210.1	TraesCS1D01G254500.1	AT3G05120.1	19500306
AT4G24210.1	TraesCS1A01G255100.1	AT3G63010.1	16709201
AT4G24210.1	TraesCS1B01G265900.1	AT3G63010.1	16709201
AT4G24210.1	TraesCS1D01G254500.1	AT3G63010.1	16709201
AT4G24210.1	TraesCS1A01G255100.1	AT3G63010.1	19500306
AT4G24210.1	TraesCS1B01G265900.1	AT3G63010.1	19500306
AT4G24210.1	TraesCS1D01G254500.1	AT3G63010.1	19500306
AT4G24210.1	TraesCS3A01G457400.1	AT4G02570.1	15161962
AT4G24210.1	TraesCS3B01G497300.1	AT4G02570.1	15161962
AT4G24210.1	TraesCS3D01G450200.1	AT4G02570.1	15161962
AT4G24210.1	TraesCS1A01G255100.1	AT5G27320.1	19500306
AT4G24210.1	TraesCS1B01G265900.1	AT5G27320.1	19500306
AT4G24210.1	TraesCS1D01G254500.1	AT5G27320.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G055700.1	Wheat	nucleus	89.5	90.32
Zm00001d016973_P001	Maize	nucleus	57.08	52.97
GSMUA_Achr9P22610_001	Banana	cytosol, nucleus, plastid	36.53	49.08
OQU85206	Sorghum	nucleus, plastid	53.88	44.19
CDY03475	Canola	nucleus	26.03	39.04
Bra013776.1-P	Field mustard	nucleus	25.57	38.36
CDY34266	Canola	nucleus	25.57	38.36
KRH15421	Soybean	cytosol	25.11	38.19
VIT_07s0129g01000.t01	Wine grape	cytosol	31.05	36.96
KRH52046	Soybean	cytosol	28.77	36.21
KRH05620	Soybean	cytosol	28.31	35.63
AT4G24210.1	Thale cress	cytosol	23.29	33.77
KRH61359	Soybean	cytosol	27.85	33.33
VIT_18s0001g09700.t01	Wine grape	nucleus	27.85	33.15
Zm00001d050903_P001	Maize	cytosol	53.42	30.63
Solyc04g078390.1.1	Tomato	cytosol, mitochondrion, nucleus	27.85	28.24
PGSC0003DMT400008560	Potato	nucleus	25.11	26.57
TraesCS4B01G263400.1	Wheat	cytosol	21.46	25.82

Protein Annotations

EnsemblPlants:TraesCS3B01G068100.1	EnsemblPlantsGene:TraesCS3B01G068100	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr3B:-:40246155..40246814

Molecular Weight (calculated)

22907.8 Da

IEP (calculated)

10.452

GRAVY (calculated)

-0.732

Length

219 amino acids

Sequence
(BLAST)

001: MKGPSGSSGG RDPWAPPPGS GGGGGGGSSE PAKKQQRTAA SSSQADEAST SSSSSSQPPP QQPPPAPDGG DVPYLGEDLM FEVLRRAEAR TLASAACVSR
101: GWRALAQDER LWEAACVREW ADLGFSEQQL RAVVLSLGGF RRLHAVSIRP IQRRRAGVPA APAQGRGRQQ PPPRLGRDQV QLSLSLFSIG FFQSMPNQPP
201: PKKKDEGDGS DKGGGGRCG

Best Arabidopsis Sequence Match ( AT4G24210.1 )
(BLAST)

001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K

Arabidopsis Description

GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.