Factsheet for Bra013776.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003520.1-P
Bra003735.1-P
Bra007722.1-P
Bra008231.1-P
Bra009970.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra014159.1-P
Bra015801.1-P
Bra017443.1-P
Bra018756.1-P
Bra018757.1-P
Bra024875.1-P
Bra025795.1-P
Bra036257.1-P
Bra039460.1-P
Bra040420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24210.1	Bra012213.1-P	AT1G20140.1	15161962
AT4G24210.1	Bra012214.1-P	AT1G20140.1	15161962
AT4G24210.1	Bra012216.1-P	AT1G20140.1	15161962
AT4G24210.1	Bra025795.1-P	AT1G20140.1	15161962
AT4G24210.1	Bra003735.1-P	AT1G75950.1	15161962
AT4G24210.1	Bra008231.1-P	AT1G75950.1	15161962
AT4G24210.1	Bra015801.1-P	AT1G75950.1	15161962
AT4G24210.1	Bra017443.1-P	AT2G01570.1	15155881
AT4G24210.1	Bra024875.1-P	AT2G01570.1	15155881
AT4G24210.1	Bra017443.1-P	AT2G01570.1	15161962
AT4G24210.1	Bra024875.1-P	AT2G01570.1	15161962
AT4G24210.1	Bra017443.1-P	AT2G01570.1	17194763
AT4G24210.1	Bra024875.1-P	AT2G01570.1	17194763
AT4G24210.1	Bra012213.1-P	AT2G25700.1	15161962
AT4G24210.1	Bra012214.1-P	AT2G25700.1	15161962
AT4G24210.1	Bra012216.1-P	AT2G25700.1	15161962
AT4G24210.1	Bra025795.1-P	AT2G25700.1	15161962
AT4G24210.1	Bra039460.1-P	AT3G05120.1	17194763
AT4G24210.1	Bra039460.1-P	AT3G05120.1	19500306
AT4G24210.1	Bra014159.1-P	AT3G60010.1	15161962
AT4G24210.1	Bra018756.1-P	AT3G60010.1	15161962
AT4G24210.1	Bra018757.1-P	AT3G60010.1	15161962
AT4G24210.1	Bra003520.1-P	AT3G63010.1	16709201
AT4G24210.1	Bra007722.1-P	AT3G63010.1	16709201
AT4G24210.1	Bra040420.1-P	AT3G63010.1	16709201
AT4G24210.1	Bra003520.1-P	AT3G63010.1	19500306
AT4G24210.1	Bra007722.1-P	AT3G63010.1	19500306
AT4G24210.1	Bra040420.1-P	AT3G63010.1	19500306
AT4G24210.1	Bra000874.1-P	AT4G02570.1	15161962
AT4G24210.1	Bra036257.1-P	AT4G02570.1	15161962
AT4G24210.1	Bra009970.1-P	AT5G27320.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34266	Canola	nucleus	99.32	99.32
CDY03475	Canola	nucleus	97.95	97.95
AT4G24210.1	Thale cress	cytosol	71.23	68.87
KRH15421	Soybean	cytosol	52.05	52.78
VIT_18s0001g09700.t01	Wine grape	nucleus	65.75	52.17
KRH52046	Soybean	cytosol	60.27	50.57
KRH61359	Soybean	cytosol	60.27	48.09
KRH05620	Soybean	cytosol	53.42	44.83
GSMUA_Achr9P22610_001	Banana	cytosol, nucleus, plastid	46.58	41.72
Solyc04g078390.1.1	Tomato	cytosol, mitochondrion, nucleus	57.53	38.89
PGSC0003DMT400008560	Potato	nucleus	54.79	38.65
TraesCS3A01G055700.1	Wheat	nucleus	38.36	25.81
TraesCS3B01G068100.1	Wheat	nucleus	38.36	25.57
Zm00001d016973_P001	Maize	nucleus	37.67	23.31
Bra020714.1-P	Field mustard	cytosol	24.66	23.08
Bra036183.1-P	Field mustard	cytosol	23.97	23.03
Bra037508.1-P	Field mustard	cytosol	24.66	22.93
OQU85206	Sorghum	nucleus, plastid	36.3	19.85
Zm00001d050903_P001	Maize	cytosol	39.73	15.18

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.6.2.3	MapMan:19.2.2.8.1.4.1	MapMan:19.2.2.8.1.4.6	EnsemblPlantsGene:Bra013776	EnsemblPlants:Bra013776.1
EnsemblPlants:Bra013776.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009845	GO:GO:0010162	GO:GO:0019005	InterPro:IPR001810
UniProt:M4DBB6	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR12874	PANTHER:PTHR12874:SF10	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0001B830B3	SEG:seg	:	:	:

Description

AT4G24210 (E=5e-057) SLY1 | SLY1 (SLEEPY1)

Coordinates

chrA01:+:7718840..7719280

Molecular Weight (calculated)

16792.2 Da

IEP (calculated)

9.749

GRAVY (calculated)

-0.495

Length

146 amino acids

Sequence
(BLAST)

001: MKRSASNSVT NGDASNKKMK KTTEEDSEIG FANLDENLLY EVLKHVDART LATSSCVSKI WHRTAQDERL WELICTRHWA NIGCSQHQLR FVVLALGGFK
101: QLHSLYLWPL SSPNQHGRLG KDELKLSLSL LSIRYYEKMN FTKRLP

Best Arabidopsis Sequence Match ( AT4G24210.1 )
(BLAST)

001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K

Arabidopsis Description

GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.