Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85206 | Sorghum | nucleus, plastid | 74.15 | 65.54 |
| TraesCS3B01G068100.1 | Wheat | nucleus | 52.97 | 57.08 |
| TraesCS3A01G055700.1 | Wheat | nucleus | 51.27 | 55.76 |
| Zm00001d050903_P001 | Maize | cytosol | 75.0 | 46.34 |
| GSMUA_Achr9P22610_001 | Banana | cytosol, nucleus, plastid | 31.78 | 46.01 |
| KRH15421 | Soybean | cytosol | 24.15 | 39.58 |
| KRH05620 | Soybean | cytosol | 27.97 | 37.93 |
| CDY34266 | Canola | nucleus | 23.31 | 37.67 |
| CDY03475 | Canola | nucleus | 23.31 | 37.67 |
| Bra013776.1-P | Field mustard | nucleus | 23.31 | 37.67 |
| VIT_07s0129g01000.t01 | Wine grape | cytosol | 27.97 | 35.87 |
| AT4G24210.1 | Thale cress | cytosol | 22.88 | 35.76 |
| KRH52046 | Soybean | cytosol | 26.27 | 35.63 |
| VIT_18s0001g09700.t01 | Wine grape | nucleus | 26.69 | 34.24 |
| KRH61359 | Soybean | cytosol | 25.42 | 32.79 |
| Solyc04g078390.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.15 | 26.39 |
| Zm00001d028159_P001 | Maize | cytosol | 19.07 | 25.28 |
| PGSC0003DMT400008560 | Potato | nucleus | 21.61 | 24.64 |
| Zm00001d048185_P001 | Maize | cytosol | 18.22 | 23.89 |
Protein Annotations
| EnsemblPlants:Zm00001d016973_P001 | EnsemblPlants:Zm00001d016973_T001 | EnsemblPlantsGene:Zm00001d016973 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR12874 | PANTHER:PTHR12874:SF10 |
| PFAM:PF00646 | ProteinID:AQK72065.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000221D7F4 | UniProt:A0A1D6HBI7 |
| MapMan:11.6.2.3 | MapMan:19.2.2.8.1.4.1 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
F-box protein GID2
Coordinates
chr5:+:181711057..181711767
Molecular Weight (calculated)
25239.0 Da
IEP (calculated)
8.621
GRAVY (calculated)
-0.626
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCRSDAPGG GDGHRDRAPA PVATGVGGSP PGERSKKQRT EEPSSSSSVV GECSSSSSQA LPPPLPEQLL QDAGVGEQPP PGPEPAGGEQ ARVPDLGEDL
101: VFEVLMRAEA RTLAAAACVS RGWRLLARDE RLWEAACVRE WACTGFSEQM LRSVVLPLGG FRRLHEMYIR PVQRRAAGAP RGQQRRQLPV RMGRDQVQVS
201: LSLLSTSFFL KMPNAPPPPP KDKDKDGDKN GGGQCG
101: VFEVLMRAEA RTLAAAACVS RGWRLLARDE RLWEAACVRE WACTGFSEQM LRSVVLPLGG FRRLHEMYIR PVQRRAAGAP RGQQRRQLPV RMGRDQVQVS
201: LSLLSTSFFL KMPNAPPPPP KDKDKDGDKN GGGQCG
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
Arabidopsis Description
GID2SLY1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.