Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013465_P001 | |
| Zm00001d016973_P001 | |
| Zm00001d033680_P001 | |
| Zm00001d050903_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038165_P003 | Maize | cytosol | 89.71 | 89.46 |
| Os05t0407500-01 | Rice | cytosol, nucleus | 80.29 | 79.38 |
| TraesCS1A01G255100.1 | Wheat | cytosol | 80.29 | 79.15 |
| TraesCS1B01G265900.1 | Wheat | cytosol | 79.71 | 78.59 |
| TraesCS1D01G254500.1 | Wheat | cytosol | 79.43 | 78.53 |
| HORVU1Hr1G060810.1 | Barley | cytosol | 78.86 | 77.97 |
| GSMUA_Achr3P24930_001 | Banana | cytosol | 60.0 | 68.63 |
| GSMUA_Achr5P27430_001 | Banana | cytosol | 59.43 | 67.53 |
| GSMUA_Achr6P16090_001 | Banana | cytosol | 58.86 | 67.1 |
| GSMUA_Achr10P... | Banana | cytosol | 58.86 | 66.45 |
| GSMUA_Achr8P05910_001 | Banana | cytosol | 57.71 | 66.23 |
| AT5G27320.1 | Thale cress | cytosol | 62.29 | 63.37 |
| Bra009970.1-P | Field mustard | cytosol | 62.0 | 62.9 |
| CDX80665 | Canola | cytosol | 61.71 | 62.79 |
| CDY16687 | Canola | cytosol | 61.71 | 62.61 |
| AT3G05120.1 | Thale cress | cytosol | 61.43 | 62.32 |
| CDY27795 | Canola | cytosol | 61.14 | 61.85 |
| GSMUA_Achr5P27450_001 | Banana | mitochondrion | 59.43 | 61.54 |
| CDY41936 | Canola | cytosol | 60.86 | 61.38 |
| VIT_07s0104g00930.t01 | Wine grape | cytosol | 60.29 | 61.34 |
| Solyc06g008870.2.1 | Tomato | cytosol | 60.0 | 60.87 |
| PGSC0003DMT400056562 | Potato | cytosol | 59.71 | 60.58 |
| KRH71503 | Soybean | cytosol | 59.14 | 60.53 |
| PGSC0003DMT400073501 | Potato | cytosol | 60.0 | 60.34 |
| KRG92803 | Soybean | cytosol | 59.14 | 60.17 |
| KRH33997 | Soybean | cytosol | 59.14 | 60.17 |
| KRH31953 | Soybean | cytosol | 58.86 | 60.06 |
| Solyc01g098390.2.1 | Tomato | cytosol | 59.71 | 59.89 |
| PGSC0003DMT400009831 | Potato | cytosol | 58.86 | 59.71 |
| Solyc09g074270.2.1 | Tomato | cytosol | 58.0 | 58.84 |
| KRH67123 | Soybean | cytosol | 57.71 | 58.38 |
| CDY67478 | Canola | cytosol | 59.71 | 58.38 |
| CDY63333 | Canola | cytosol | 59.43 | 58.1 |
| Bra007722.1-P | Field mustard | cytosol | 58.86 | 57.54 |
| AT3G63010.1 | Thale cress | cytosol | 58.29 | 56.98 |
| CDX89165 | Canola | cytosol | 58.57 | 56.94 |
| VIT_14s0030g00440.t01 | Wine grape | cytosol | 61.14 | 56.76 |
| CDX67913 | Canola | cytosol | 58.0 | 56.7 |
| Bra003520.1-P | Field mustard | cytosol | 58.0 | 56.7 |
| CDY70667 | Canola | cytosol | 57.71 | 56.42 |
| Bra040420.1-P | Field mustard | cytosol | 58.0 | 56.39 |
| CDX93945 | Canola | extracellular, golgi | 55.71 | 54.78 |
| Bra039460.1-P | Field mustard | cytosol | 61.43 | 54.29 |
| Zm00001d022323_P001 | Maize | cytosol, mitochondrion | 36.29 | 37.03 |
| Zm00001d007257_P001 | Maize | plastid | 35.71 | 36.13 |
| Zm00001d022326_P001 | Maize | cytosol | 34.57 | 35.48 |
| Zm00001d007258_P001 | Maize | mitochondrion | 34.57 | 34.28 |
| Zm00001d022320_P001 | Maize | plastid | 34.86 | 34.27 |
| Zm00001d022327_P001 | Maize | plasma membrane | 34.57 | 33.89 |
| Zm00001d022317_P001 | Maize | mitochondrion, plastid | 33.71 | 33.62 |
| Zm00001d018857_P001 | Maize | cytosol, extracellular | 31.14 | 33.23 |
| Zm00001d008634_P001 | Maize | cytosol | 30.86 | 32.63 |
| Zm00001d013099_P001 | Maize | extracellular | 31.43 | 32.45 |
| Zm00001d022101_P001 | Maize | cytosol | 28.57 | 32.36 |
| Zm00001d018853_P001 | Maize | cytosol, plastid | 30.86 | 31.3 |
| Zm00001d007909_P001 | Maize | plastid | 30.29 | 30.9 |
| Zm00001d022372_P001 | Maize | cytosol | 21.71 | 30.89 |
| Zm00001d039795_P001 | Maize | cytosol | 22.86 | 30.89 |
| Zm00001d008635_P001 | Maize | cytosol | 30.0 | 30.88 |
| Zm00001d007908_P001 | Maize | cytosol | 29.43 | 30.12 |
| Zm00001d018854_P001 | Maize | cytosol | 30.0 | 29.91 |
| Zm00001d018848_P001 | Maize | cytosol | 28.57 | 29.85 |
| Zm00001d039799_P001 | Maize | cytosol | 28.86 | 29.79 |
| Zm00001d032036_P001 | Maize | extracellular | 27.71 | 29.48 |
| Zm00001d018855_P001 | Maize | extracellular | 30.57 | 29.08 |
| Zm00001d047883_P001 | Maize | mitochondrion | 29.43 | 27.84 |
| Zm00001d020032_P001 | Maize | peroxisome | 27.14 | 27.46 |
| Zm00001d038177_P001 | Maize | cytosol | 24.86 | 27.44 |
| Zm00001d010284_P001 | Maize | cytosol | 28.57 | 27.32 |
| Zm00001d038178_P001 | Maize | cytosol | 28.0 | 27.3 |
| Zm00001d028440_P001 | Maize | peroxisome | 25.43 | 26.89 |
Protein Annotations
| EntrezGene:100216730 | MapMan:11.6.2.1 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_3 | ProteinID:AQK93810.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:IPR029058 |
| UniProt:K7VVH3 | InterPro:Lipase_GDXG_HIS_AS | InterPro:Lipase_GDXG_put_SER_AS | PFAM:PF07859 | ScanProsite:PS01173 | ScanProsite:PS01174 |
| PANTHER:PTHR23024 | PANTHER:PTHR23024:SF227 | SUPFAM:SSF53474 | UniParc:UPI00022093E0 | EnsemblPlantsGene:Zm00001d010308 | EnsemblPlants:Zm00001d010308_P001 |
| EnsemblPlants:Zm00001d010308_T001 | SEG:seg | : | : | : | : |
Description
Gibberellin receptor GID1A
Coordinates
chr8:+:108952820..108955164
Molecular Weight (calculated)
38372.2 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.259
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSDEVNRN ECKGAVPIHT WVLISNFKLA YNMLRRADGT FDRDLAEFLD RRVAPDARAQ EGVSSFDHVI DTSTGLEVRI YRAAANNNGG GGATLPILDF
101: LGGTPAASTP FPVILFFHGG SFAHSSSGTA IYDNLCRRLV RLSKGVVVSV NYRRAPEHRY PCAYDDGWAA LKWATSQPSL GSGSSGGARV FLSGDSSGGN
201: IAHHVAVRAA VAGIRVRGNV LLNAMFGGAE RTESERRLDG KYFVTLQDRD WYWKAYLPED ADRDHPACNP FGPNGRRLAG LPFPRSLIIV SGLDLTCDRQ
301: LAYADGLRED GHHVKLVYRE KATVGFYLLP NTNHYHEVME EIADFLRANL
101: LGGTPAASTP FPVILFFHGG SFAHSSSGTA IYDNLCRRLV RLSKGVVVSV NYRRAPEHRY PCAYDDGWAA LKWATSQPSL GSGSSGGARV FLSGDSSGGN
201: IAHHVAVRAA VAGIRVRGNV LLNAMFGGAE RTESERRLDG KYFVTLQDRD WYWKAYLPED ADRDHPACNP FGPNGRRLAG LPFPRSLIIV SGLDLTCDRQ
301: LAYADGLRED GHHVKLVYRE KATVGFYLLP NTNHYHEVME EIADFLRANL
001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
Arabidopsis Description
GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.