Factsheet for Os05t0407500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 16193045

gfp PMID: 16193045 doi

M Ueguchi-Tanaka, M Ashikari, M Nakajima, H Itoh, E Katoh, M Kobayashi, TY Chow, YI Hsing, H Kitano, I Yamaguchi, M Matsuoka

Bioscience and Biotechnology Center, Nagoya University, Nagoya 464-8601, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0707600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	Os03t0707600-01	AT1G14920.1	16709201
AT3G05120.1	Os03t0707600-01	AT1G14920.1	17194763
AT3G05120.1	Os03t0707600-01	AT1G14920.1	17416730
AT3G05120.1	Os03t0707600-01	AT1G14920.1	18827182
AT3G05120.1	Os03t0707600-01	AT1G14920.1	19500306
AT3G05120.1	Os03t0707600-01	AT2G01570.1	16709201
AT3G05120.1	Os03t0707600-01	AT2G01570.1	17194763
AT3G05120.1	Os03t0707600-01	AT2G01570.1	17416730
AT3G05120.1	Os03t0707600-01	AT2G01570.1	19500306
AT3G63010.1	Os03t0707600-01	AT1G14920.1	16709201
AT3G63010.1	Os03t0707600-01	AT1G14920.1	17194763
AT3G63010.1	Os03t0707600-01	AT1G14920.1	18827182
AT3G63010.1	Os03t0707600-01	AT1G14920.1	19500306
AT3G63010.1	Os03t0707600-01	AT2G01570.1	16709201
AT3G63010.1	Os03t0707600-01	AT2G01570.1	17194763
AT3G63010.1	Os03t0707600-01	AT2G01570.1	18827182
AT3G63010.1	Os03t0707600-01	AT2G01570.1	19429606
AT3G63010.1	Os03t0707600-01	AT2G01570.1	19500306
AT5G27320.1	Os03t0707600-01	AT1G14920.1	16709201
AT5G27320.1	Os03t0707600-01	AT1G14920.1	17194763
AT5G27320.1	Os03t0707600-01	AT1G14920.1	18827182
AT5G27320.1	Os03t0707600-01	AT1G14920.1	19500306
AT5G27320.1	Os03t0707600-01	AT2G01570.1	16709201
AT5G27320.1	Os03t0707600-01	AT2G01570.1	17194763
AT5G27320.1	Os03t0707600-01	AT2G01570.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21982	Sorghum	cytosol	83.62	83.38
HORVU1Hr1G060810.1	Barley	cytosol	82.77	82.77
TraesCS1B01G265900.1	Wheat	cytosol	82.77	82.54
TraesCS1A01G255100.1	Wheat	cytosol	82.49	82.25
Zm00001d038165_P003	Maize	cytosol	81.36	82.05
TraesCS1D01G254500.1	Wheat	cytosol	81.64	81.64
Zm00001d010308_P001	Maize	cytosol, plastid	79.38	80.29
GSMUA_Achr3P24930_001	Banana	cytosol	58.76	67.97
GSMUA_Achr5P27430_001	Banana	cytosol	57.63	66.23
GSMUA_Achr6P16090_001	Banana	cytosol	57.06	65.8
GSMUA_Achr8P05910_001	Banana	cytosol	56.5	65.57
GSMUA_Achr10P...	Banana	cytosol	56.5	64.52
CDX80665	Canola	cytosol	62.15	63.95
Bra009970.1-P	Field mustard	cytosol	62.15	63.77
AT5G27320.1	Thale cress	cytosol	61.86	63.66
CDY16687	Canola	cytosol	61.86	63.48
AT3G05120.1	Thale cress	cytosol	61.58	63.19
KRG92803	Soybean	cytosol	60.73	62.5
VIT_07s0104g00930.t01	Wine grape	cytosol	60.73	62.5
Solyc06g008870.2.1	Tomato	cytosol	60.73	62.32
PGSC0003DMT400056562	Potato	cytosol	60.45	62.03
KRH71503	Soybean	cytosol	59.89	61.99
CDY27795	Canola	cytosol	60.45	61.85
KRH33997	Soybean	cytosol	59.89	61.63
KRH31953	Soybean	cytosol	59.6	61.52
PGSC0003DMT400073501	Potato	cytosol	60.17	61.21
CDY41936	Canola	cytosol	59.89	61.1
Solyc01g098390.2.1	Tomato	cytosol	60.17	61.03
KRH67123	Soybean	cytosol	59.32	60.69
PGSC0003DMT400009831	Potato	cytosol	59.04	60.58
GSMUA_Achr5P27450_001	Banana	mitochondrion	57.63	60.35
Solyc09g074270.2.1	Tomato	cytosol	58.19	59.71
AT3G63010.1	Thale cress	cytosol	59.89	59.22
CDY67478	Canola	cytosol	59.6	58.94
CDY63333	Canola	cytosol	59.32	58.66
Bra040420.1-P	Field mustard	cytosol	59.6	58.61
CDX89165	Canola	cytosol	59.6	58.61
Bra007722.1-P	Field mustard	cytosol	59.04	58.38
VIT_14s0030g00440.t01	Wine grape	cytosol	61.58	57.82
Bra003520.1-P	Field mustard	cytosol	58.47	57.82
CDX67913	Canola	cytosol	58.47	57.82
CDY70667	Canola	cytosol	57.91	57.26
CDX93945	Canola	extracellular, golgi	56.78	56.46
Bra039460.1-P	Field mustard	cytosol	60.45	54.04
Os07t0643400-01	Rice	plasma membrane	38.14	38.03
Os07t0643100-01	Rice	plasma membrane	35.31	36.23
Os11t0239500-01	Rice	plasma membrane	37.01	35.69
Os07t0643000-01	Rice	plasma membrane	35.31	35.61
Os06t0306600-01	Rice	cytosol	35.31	34.72
Os07t0643700-01	Rice	cytosol	35.03	34.25
Os11t0240600-01	Rice	plasma membrane	33.05	33.33
Os07t0606800-01	Rice	plastid	34.18	32.97
Os07t0162400-01	Rice	cytosol, plasma membrane, plastid	28.25	30.58
Os07t0162500-02	Rice	cytosol, plasma membrane	27.4	29.57
Os03t0790500-01	Rice	plasma membrane	29.66	29.17
Os01t0155000-02	Rice	cytosol	27.4	28.78
Os03t0258200-01	Rice	mitochondrion	29.38	28.34
Os01t0153800-00	Rice	cytosol	29.38	28.34
Os07t0162700-01	Rice	cytosol, plastid	27.4	27.64
Os08t0547800-01	Rice	cytosol, plasma membrane	25.71	27.58
Os11t0138900-01	Rice	cytosol, extracellular	26.84	26.69
Os05t0410200-01	Rice	plasma membrane	27.12	26.52
Os07t0162900-01	Rice	cytosol, peroxisome, plastid	29.38	26.07
Os12t0135800-01	Rice	cytosol	25.99	25.56
Os12t0135500-00	Rice	cytosol	24.01	23.94
Os03t0252100-01	Rice	cytosol, peroxisome	23.45	23.78
Os07t0162600-02	Rice	cytosol, plasma membrane	0.28	0.3

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	PDB:3EBL	PDB:3ED1	EntrezGene:4338764	ProteinID:AAT38036.1
ProteinID:AAV59435.1	EMBL:AB211399	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	EMBL:AK074026	ProteinID:BAF17434.1
ProteinID:BAS93968.1	ProteinID:EEE63694.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005975
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009056	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009739	GO:GO:0009740
GO:GO:0009791	GO:GO:0009908	GO:GO:0009939	GO:GO:0009987	GO:GO:0010325	GO:GO:0010331
GO:GO:0016787	GO:GO:0048444	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS	EnsemblPlantsGene:Os05g0407500
EnsemblPlants:Os05t0407500-01	PFAM:PF07859	ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227
UniProt:Q6L545	SUPFAM:SSF53474	UniParc:UPI0000351DC5	RefSeq:XP_015639961.1	SEG:seg	:

Description

GIBBERELLIN INSENSITIVE DWARF1Soluble gibberellin receptor, Gibberellin signaling (Os05t0407500-01)

Coordinates

chr5:+:19868485..19871283

Molecular Weight (calculated)

39459.5 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.244

Length

354 amino acids

Sequence
(BLAST)

001: MAGSDEVNRN ECKTVVPLHT WVLISNFKLS YNILRRADGT FERDLGEYLD RRVPANARPL EGVSSFDHII DQSVGLEVRI YRAAAEGDAE EGAAAVTRPI
101: LEFLTDAPAA EPFPVIIFFH GGSFVHSSAS STIYDSLCRR FVKLSKGVVV SVNYRRAPEH RYPCAYDDGW TALKWVMSQP FMRSGGDAQA RVFLSGDSSG
201: GNIAHHVAVR AADEGVKVCG NILLNAMFGG TERTESERRL DGKYFVTLQD RDWYWKAYLP EDADRDHPAC NPFGPNGRRL GGLPFAKSLI IVSGLDLTCD
301: RQLAYADALR EDGHHVKVVQ CENATVGFYL LPNTVHYHEV MEEISDFLNA NLYY

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.