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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03475
CDY04092
CDY17662
CDY34266
CDY36236
CDY43122
CDY50707
CDY55037
CDY64837
CDY70426

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G63010.1 CDY55037 AT1G66350.1 16709201
AT3G63010.1 CDY70426 AT1G66350.1 16709201
AT3G63010.1 CDY55037 AT1G66350.1 19500306
AT3G63010.1 CDY70426 AT1G66350.1 19500306
AT3G63010.1 CDY04092 AT2G01570.1 16709201
AT3G63010.1 CDY17662 AT2G01570.1 16709201
AT3G63010.1 CDY36236 AT2G01570.1 16709201
AT3G63010.1 CDY64837 AT2G01570.1 16709201
AT3G63010.1 CDY04092 AT2G01570.1 17194763
AT3G63010.1 CDY17662 AT2G01570.1 17194763
AT3G63010.1 CDY36236 AT2G01570.1 17194763
AT3G63010.1 CDY64837 AT2G01570.1 17194763
AT3G63010.1 CDY04092 AT2G01570.1 18827182
AT3G63010.1 CDY17662 AT2G01570.1 18827182
AT3G63010.1 CDY36236 AT2G01570.1 18827182
AT3G63010.1 CDY64837 AT2G01570.1 18827182
AT3G63010.1 CDY04092 AT2G01570.1 19429606
AT3G63010.1 CDY17662 AT2G01570.1 19429606
AT3G63010.1 CDY36236 AT2G01570.1 19429606
AT3G63010.1 CDY64837 AT2G01570.1 19429606
AT3G63010.1 CDY04092 AT2G01570.1 19500306
AT3G63010.1 CDY17662 AT2G01570.1 19500306
AT3G63010.1 CDY36236 AT2G01570.1 19500306
AT3G63010.1 CDY64837 AT2G01570.1 19500306
AT3G63010.1 CDY43122 AT3G03450.1 16709201
AT3G63010.1 CDY50707 AT3G03450.1 16709201
AT3G63010.1 CDY43122 AT3G03450.1 19500306
AT3G63010.1 CDY50707 AT3G03450.1 19500306
AT3G63010.1 CDY03475 AT4G24210.1 16709201
AT3G63010.1 CDY34266 AT4G24210.1 16709201
AT3G63010.1 CDY03475 AT4G24210.1 19500306
AT3G63010.1 CDY34266 AT4G24210.1 19500306
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003520.1-P Field mustard cytosol 98.32 98.32
CDX67913 Canola cytosol 98.04 98.04
CDX89165 Canola cytosol 93.3 92.78
CDY63333 Canola cytosol 90.22 90.22
CDY67478 Canola cytosol 89.94 89.94
CDX93945 Canola extracellular, golgi 87.99 88.48
AT3G63010.1 Thale cress cytosol 87.71 87.71
VIT_07s0104g00930.t01 Wine grape cytosol 74.3 77.33
Solyc06g008870.2.1 Tomato cytosol 73.18 75.94
PGSC0003DMT400009831 Potato cytosol 73.18 75.94
PGSC0003DMT400056562 Potato cytosol 72.91 75.65
Solyc09g074270.2.1 Tomato cytosol 71.51 74.2
KRH71503 Soybean cytosol 70.67 73.98
KRH31953 Soybean cytosol 69.55 72.59
KRH67123 Soybean cytosol 68.72 71.1
CDX80665 Canola cytosol 67.88 70.64
CDY16687 Canola cytosol 67.88 70.43
CDY27795 Canola cytosol 64.53 66.76
CDY41936 Canola cytosol 64.53 66.57
GSMUA_Achr3P24930_001 Banana cytosol 56.7 66.34
GSMUA_Achr6P16090_001 Banana cytosol 56.42 65.8
GSMUA_Achr8P05910_001 Banana cytosol 55.31 64.92
GSMUA_Achr5P27430_001 Banana cytosol 55.59 64.61
GSMUA_Achr10P... Banana cytosol 55.31 63.87
GSMUA_Achr5P27450_001 Banana mitochondrion 55.31 58.58
Os05t0407500-01 Rice cytosol, nucleus 57.26 57.91
Zm00001d010308_P001 Maize cytosol, plastid 56.42 57.71
KXG21982 Sorghum cytosol 56.98 57.46
Zm00001d038165_P003 Maize cytosol 56.15 57.27
TraesCS1B01G265900.1 Wheat cytosol 56.42 56.9
TraesCS1A01G255100.1 Wheat cytosol 56.42 56.9
HORVU1Hr1G060810.1 Barley cytosol 55.87 56.5
TraesCS1D01G254500.1 Wheat cytosol 55.59 56.21
CDY16855 Canola cytosol 36.03 38.51
CDX88032 Canola cytosol 35.47 37.91
CDX87169 Canola cytosol 35.2 37.61
CDX80370 Canola cytosol 35.2 37.61
CDY55764 Canola cytosol 20.39 31.2
CDX81008 Canola cytosol 28.77 30.84
CDX98936 Canola cytosol 28.49 30.72
CDX70090 Canola cytosol 28.49 30.72
CDX87235 Canola cytosol, nucleus, plastid 21.51 29.84
CDY18915 Canola cytosol 27.09 29.75
CDY16790 Canola cytosol 27.09 29.57
CDX74751 Canola cytosol 26.26 29.56
CDX69476 Canola cytosol 27.37 29.52
CDY70129 Canola cytosol 27.37 29.43
CDY18914 Canola cytosol 24.3 26.85
CDX74752 Canola cytosol 24.3 26.85
CDY30708 Canola cytosol 19.55 25.36
Protein Annotations
MapMan:11.6.2.1Gene3D:3.40.50.1820GO:A0A078JYC9UniProt:A0A078JYC9InterPro:AB_hydrolaseInterPro:AB_hydrolase_3
EnsemblPlants:CDY70667ProteinID:CDY70667ProteinID:CDY70667.1GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00005135001InterPro:IPR029058InterPro:Lipase_GDXG_HIS_ASInterPro:Lipase_GDXG_put_SER_AS
PFAM:PF07859ScanProsite:PS01173ScanProsite:PS01174PANTHER:PTHR23024PANTHER:PTHR23024:SF353SUPFAM:SSF53474
UniParc:UPI0004EE38E9:::::
Description
BnaCnng69280DBnaCnng69280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYC9]
Coordinates
chrLK042868:-:838..2547
Molecular Weight (calculated)
40364.2 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.178
Length
358 amino acids
Sequence
(BLAST)
001: MAAGNEVNLN ECKRIVPLNT WVLISNFKLA YTLLRRPDGS FNRHLAEFLD RKVPPNSFPL DGVFSFDHLD SSTNLLTRIY LPAPLDPSRY GAVDLTEPLS
101: TTEIVPVLVF FHGGSFTHSS VNSAIYDTLC RRLVTICGVV VVSVDYRRSP EHRYSCAYDD GWNALKWVKS RIWLRSGKDS DVYVYLAGDS SGGNIAHNVV
201: VRATNEGVKV LGNILLHPMF GGVERTQSEK RLDGKYFVTV QDRDWYWRAF LPQGEDRDHP ACNPFGPRGR CLEGVKFPKS LVVVAGLDLV QDWQLAYVDG
301: LKKSGQDVNL LYLKQATIGF YFLPNNDHFR CLMDELKKFV HSIEDDSLSK SSPILLTP
Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
Arabidopsis Description
GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.