Factsheet for PGSC0003DMT400056562

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008560
PGSC0003DMT400040589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63010.1	PGSC0003DMT400040589	AT1G66350.1	16709201
AT3G63010.1	PGSC0003DMT400040589	AT1G66350.1	19500306
AT3G63010.1	PGSC0003DMT400040589	AT3G03450.1	16709201
AT3G63010.1	PGSC0003DMT400040589	AT3G03450.1	19500306
AT3G63010.1	PGSC0003DMT400008560	AT4G24210.1	16709201
AT3G63010.1	PGSC0003DMT400008560	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008870.2.1	Tomato	cytosol	99.71	99.71
PGSC0003DMT400009831	Potato	cytosol	87.54	87.54
VIT_07s0104g00930.t01	Wine grape	cytosol	83.19	83.43
KRH71503	Soybean	cytosol	78.84	79.53
KRH31953	Soybean	cytosol	77.39	77.84
AT3G63010.1	Thale cress	cytosol	78.55	75.7
CDY67478	Canola	cytosol	78.26	75.42
CDY63333	Canola	cytosol	77.97	75.14
KRH67123	Soybean	cytosol	74.78	74.57
CDX89165	Canola	cytosol	77.68	74.44
Bra040420.1-P	Field mustard	cytosol	77.68	74.44
Bra007722.1-P	Field mustard	cytosol	76.81	74.02
CDY70667	Canola	cytosol	75.65	72.91
CDX67913	Canola	cytosol	75.65	72.91
Bra003520.1-P	Field mustard	cytosol	75.65	72.91
CDX93945	Canola	extracellular, golgi	75.07	72.75
PGSC0003DMT400073501	Potato	cytosol	71.88	71.26
GSMUA_Achr3P24930_001	Banana	cytosol	61.45	69.28
GSMUA_Achr5P27430_001	Banana	cytosol	61.74	69.16
GSMUA_Achr8P05910_001	Banana	cytosol	60.87	68.85
GSMUA_Achr10P...	Banana	cytosol	60.87	67.74
GSMUA_Achr6P16090_001	Banana	cytosol	59.42	66.78
GSMUA_Achr5P27450_001	Banana	mitochondrion	61.45	62.72
Os05t0407500-01	Rice	cytosol, nucleus	62.03	60.45
TraesCS1B01G265900.1	Wheat	cytosol	61.74	60.0
HORVU1Hr1G060810.1	Barley	cytosol	61.45	59.89
TraesCS1A01G255100.1	Wheat	cytosol	61.45	59.72
Zm00001d010308_P001	Maize	cytosol, plastid	60.58	59.71
TraesCS1D01G254500.1	Wheat	cytosol	61.16	59.6
Zm00001d038165_P003	Maize	cytosol	60.29	59.26
KXG21982	Sorghum	cytosol	60.87	59.15
PGSC0003DMT400007788	Potato	cytosol	29.57	31.68
PGSC0003DMT400033010	Potato	cytosol	28.41	29.61
PGSC0003DMT400033749	Potato	cytosol	29.28	29.19
PGSC0003DMT400040972	Potato	cytosol	26.38	29.17
PGSC0003DMT400054431	Potato	cytosol	28.12	28.96
PGSC0003DMT400022327	Potato	cytosol	20.58	28.74
PGSC0003DMT400057917	Potato	cytosol	26.67	28.05
PGSC0003DMT400017198	Potato	cytosol	25.8	27.47
PGSC0003DMT400048357	Potato	cytosol	25.51	26.91
PGSC0003DMT400057919	Potato	cytosol	25.51	26.91
PGSC0003DMT400000390	Potato	cytosol	26.38	26.84
PGSC0003DMT400071863	Potato	cytosol	25.22	26.69
PGSC0003DMT400017199	Potato	mitochondrion	25.51	26.51
PGSC0003DMT400050566	Potato	cytosol	24.93	26.38
PGSC0003DMT400033220	Potato	cytosol	23.77	25.62

Protein Annotations

EntrezGene:102604924	MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS
InterPro:Lipase_GDXG_put_SER_AS	UniProt:M1BZM4	PFAM:PF07859	EnsemblPlantsGene:PGSC0003DMG400021991	PGSC:PGSC0003DMG400021991	EnsemblPlants:PGSC0003DMT400056562
ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF98	SUPFAM:SSF53474	UniParc:UPI000296513A
RefSeq:XP_006362976.1	SEG:seg	:	:	:	:

Description

GID1-like gibberellin receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400021991]

Coordinates

chr6:-:774965..778115

Molecular Weight (calculated)

39145.4 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.335

Length

345 amino acids

Sequence
(BLAST)

001: MAGSNEINAN ESKRVVPLNT WILISNFKLS YNMLRRPDGT FDRDLAEFID RKVPTNSIPV DGVYSFDVFD RVTSLLNRIY RPAPENEADW GKIELEKPLS
101: TTEIVPVIIY FHGGSFTHSS ANSAIYDTFC RRLVKICKAV VVSVNYRRSP EHRYPCAYDD GWAALKWVKS RTWLQSGKDS KVHVYMAGDS SGGNIAHHVA
201: VMAAEAGVEV LGNIHLHPMF GGQNRTESEK RLDGKYFVTV QDRDWYWRAY LPEGEDRDHP ACNIFGSRSR SLKGLKFPKS LVVVAGLDLS QDWQLAYVDG
301: LKNSGHEVNL LYLKQATIGF YFLPNNDHFP CLMEEITNFI HPNCS

Best Arabidopsis Sequence Match ( AT3G63010.1 )
(BLAST)

001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP

Arabidopsis Description

GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.