Factsheet for PGSC0003DMT400057917

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057919	Potato	cytosol	84.76	85.02
PGSC0003DMT400017199	Potato	mitochondrion	61.28	60.54
PGSC0003DMT400017198	Potato	cytosol	59.45	60.19
Solyc01g098140.2.1	Tomato	cytosol	95.12	48.15
PGSC0003DMT400033220	Potato	cytosol	40.55	41.56
PGSC0003DMT400000390	Potato	cytosol	42.07	40.71
PGSC0003DMT400050566	Potato	cytosol	38.11	38.34
PGSC0003DMT400071863	Potato	cytosol	37.8	38.04
PGSC0003DMT400048357	Potato	cytosol	36.59	36.7
PGSC0003DMT400007788	Potato	cytosol	32.01	32.61
PGSC0003DMT400033010	Potato	cytosol	32.01	31.72
PGSC0003DMT400033749	Potato	cytosol	32.93	31.21
PGSC0003DMT400040972	Potato	cytosol	28.96	30.45
PGSC0003DMT400022327	Potato	cytosol	22.87	30.36
PGSC0003DMT400054431	Potato	cytosol	30.49	29.85
PGSC0003DMT400073501	Potato	cytosol	29.57	27.87
PGSC0003DMT400056562	Potato	cytosol	28.05	26.67
PGSC0003DMT400009831	Potato	cytosol	26.83	25.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400057917	EnsemblPlantsGene:PGSC0003DMG400022492	EntrezGene:102581191	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
MEROPS:S09.A14	PANTHER:PTHR23024	PANTHER:PTHR23024:SF348	PFAM:PF07859	PGSC:PGSC0003DMG400022492	RefSeq:XP_006347830.1
SUPFAM:SSF53474	UniParc:UPI0002951048	UniProt:M1C1W4	MapMan:35.1	:	:

Description

Gibberellin receptor GID1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022492]

Coordinates

chr1:+:75777696..75778682

Molecular Weight (calculated)

36802.6 Da

IEP (calculated)

5.218

GRAVY (calculated)

-0.051

Length

328 amino acids

Sequence
(BLAST)

001: MSNQIAPIDP NVDPYGYLGI IPNTDGSITR SQIPPRPFST TIPDHDSSVF IKDLVINPVK DTWARIIIPH EVLNSENKLP LVVYFHGGGF VMAITIDTPI
101: LQKFCATLAV EIPAIIVSVD YRYAPENRLP AAYDDCVESL YWIKNTPNEL LKKYADFSKC FLLGTSSGGN IAYHVGLRVA GVSEYLKPLE IKGLILYHSL
201: FGGNERTKSE LRLARDKMLP LNVSDIMWEL GLPIGSDRDH PYCNPMVEIQ SNENLFDQVK IQGWKILIID CDGDPLIDRQ IEFSKMLKAK GVQVVDCFSE
301: GGFHGCEYFD GMKLKELTLV VKEFMRGN

Best Arabidopsis Sequence Match ( AT5G62180.1 )
(BLAST)

001: MSEPSPIADP YAYLNIVNNP DGSITRDLSN FPCTAATPDP SPLNPAVSKD LPVNQLKSTW LRLYLPSSAV NEGNVSSQKL PIVVYYHGGG FILCSVDMQL
101: FHDFCSEVAR DLNAIVVSPS YRLAPEHRLP AAYDDGVEAL DWIKTSDDEW IKSHADFSNV FLMGTSAGGN LAYNVGLRSV DSVSDLSPLQ IRGLILHHPF
201: FGGEERSESE IRLMNDQVCP PIVTDVMWDL SLPVGVDRDH EYSNPTVGDG SEKLEKIGRL RWKVMMIGGE DDPMIDLQKD VAKLMKKKGV EVVEHYTGGH
301: VHGAEIRDPS KRKTLFLSIK NFIFSVL

Arabidopsis Description

CXE20Probable carboxylesterase 120 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.