Factsheet for PGSC0003DMT400073501

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008560
PGSC0003DMT400040589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05120.1	PGSC0003DMT400040589	AT1G66350.1	16709201
AT3G05120.1	PGSC0003DMT400040589	AT1G66350.1	19500306
AT3G05120.1	PGSC0003DMT400040589	AT3G03450.1	16709201
AT3G05120.1	PGSC0003DMT400040589	AT3G03450.1	19500306
AT3G05120.1	PGSC0003DMT400008560	AT4G24210.1	16709201
AT3G05120.1	PGSC0003DMT400008560	AT4G24210.1	19500306
AT5G27320.1	PGSC0003DMT400040589	AT1G66350.1	16709201
AT5G27320.1	PGSC0003DMT400040589	AT1G66350.1	19500306
AT5G27320.1	PGSC0003DMT400040589	AT3G03450.1	16709201
AT5G27320.1	PGSC0003DMT400040589	AT3G03450.1	19500306
AT5G27320.1	PGSC0003DMT400008560	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098390.2.1	Tomato	cytosol	97.41	97.13
KRH33997	Soybean	cytosol	78.16	79.07
AT5G27320.1	Thale cress	cytosol	77.01	77.91
AT3G05120.1	Thale cress	cytosol	76.15	76.81
KRG92803	Soybean	cytosol	75.86	76.74
Bra009970.1-P	Field mustard	cytosol	75.29	75.94
CDY16687	Canola	cytosol	75.29	75.94
CDX80665	Canola	cytosol	75.0	75.87
VIT_14s0030g00440.t01	Wine grape	cytosol	81.9	75.6
CDY41936	Canola	cytosol	72.99	73.2
CDY27795	Canola	cytosol	72.7	73.12
PGSC0003DMT400056562	Potato	cytosol	71.26	71.88
PGSC0003DMT400009831	Potato	cytosol	70.11	70.72
GSMUA_Achr3P24930_001	Banana	cytosol	60.63	68.95
GSMUA_Achr8P05910_001	Banana	cytosol	59.48	67.87
GSMUA_Achr5P27430_001	Banana	cytosol	60.06	67.86
GSMUA_Achr10P...	Banana	cytosol	58.05	65.16
GSMUA_Achr6P16090_001	Banana	cytosol	57.47	65.15
Bra039460.1-P	Field mustard	cytosol	72.7	63.89
GSMUA_Achr5P27450_001	Banana	mitochondrion	59.77	61.54
TraesCS1B01G265900.1	Wheat	cytosol	61.49	60.28
HORVU1Hr1G060810.1	Barley	cytosol	61.21	60.17
Os05t0407500-01	Rice	cytosol, nucleus	61.21	60.17
Zm00001d010308_P001	Maize	cytosol, plastid	60.34	60.0
TraesCS1A01G255100.1	Wheat	cytosol	60.92	59.72
TraesCS1D01G254500.1	Wheat	cytosol	60.63	59.6
KXG21982	Sorghum	cytosol	60.34	59.15
Zm00001d038165_P003	Maize	cytosol	59.48	58.97
PGSC0003DMT400040972	Potato	cytosol	27.87	31.09
PGSC0003DMT400007788	Potato	cytosol	27.87	30.12
PGSC0003DMT400033749	Potato	cytosol	29.6	29.77
PGSC0003DMT400057917	Potato	cytosol	27.87	29.57
PGSC0003DMT400033010	Potato	cytosol	27.59	29.0
PGSC0003DMT400054431	Potato	cytosol	27.59	28.66
PGSC0003DMT400033220	Potato	cytosol	26.15	28.44
PGSC0003DMT400057919	Potato	cytosol	26.44	28.13
PGSC0003DMT400017198	Potato	cytosol	26.15	28.09
PGSC0003DMT400017199	Potato	mitochondrion	26.72	28.01
PGSC0003DMT400000390	Potato	cytosol	27.01	27.73
PGSC0003DMT400022327	Potato	cytosol	19.25	27.13
PGSC0003DMT400071863	Potato	cytosol	25.29	26.99
PGSC0003DMT400048357	Potato	cytosol	25.29	26.91
PGSC0003DMT400050566	Potato	cytosol	25.0	26.69

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS
UniProt:M1CS49	PFAM:PF07859	EnsemblPlantsGene:PGSC0003DMG400028559	PGSC:PGSC0003DMG400028559	EnsemblPlants:PGSC0003DMT400073501	ScanProsite:PS01173
ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227	SUPFAM:SSF53474	UniParc:UPI0002949F9F	SEG:seg

Description

Gibberellin receptor GID1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028559]

Coordinates

chr1:+:76033925..76036841

Molecular Weight (calculated)

39249.5 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.228

Length

348 amino acids

Sequence
(BLAST)

001: MARNNEAVAN ESKSESKRVV PLNTWILISN FKLSYNLLRR PDGTFNRHLA EFLDRKVPAN ANPVDGVFSF DVVINREIGL LSRVYRPSFE DGASPSIIEL
101: EKPVTADVVP VIIFFHGGSF AHSSFNSAIY DTLCRRLVGI CKAVVVSVNY RRAPENRYPC AYDDGWTVLE WVNSREWLRS KKDSKVHIYL AGDSSGGNIV
201: HNVAFRAVES NIEVLGNILL NPMFGGQERT ESEKRLDGKY FVTLQDRDWY WRAYLPEDSD RDHPACNPFG PNGINLKGVK FPKNLVVVAG LDLVQDWQLA
301: YADGLKKAGQ VVNLIYLEKA TIGFYLLPNN EHFYSVMDEI SSFVSSDS

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.