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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03475
CDY04092
CDY17662
CDY34266
CDY36236
CDY43122
CDY50707
CDY55037
CDY64837
CDY70426

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G05120.1 CDY55037 AT1G66350.1 16709201
AT3G05120.1 CDY70426 AT1G66350.1 16709201
AT3G05120.1 CDY55037 AT1G66350.1 19500306
AT3G05120.1 CDY70426 AT1G66350.1 19500306
AT3G05120.1 CDY04092 AT2G01570.1 16709201
AT3G05120.1 CDY17662 AT2G01570.1 16709201
AT3G05120.1 CDY36236 AT2G01570.1 16709201
AT3G05120.1 CDY64837 AT2G01570.1 16709201
AT3G05120.1 CDY04092 AT2G01570.1 17194763
AT3G05120.1 CDY17662 AT2G01570.1 17194763
AT3G05120.1 CDY36236 AT2G01570.1 17194763
AT3G05120.1 CDY64837 AT2G01570.1 17194763
AT3G05120.1 CDY04092 AT2G01570.1 17416730
AT3G05120.1 CDY17662 AT2G01570.1 17416730
AT3G05120.1 CDY36236 AT2G01570.1 17416730
AT3G05120.1 CDY64837 AT2G01570.1 17416730
AT3G05120.1 CDY04092 AT2G01570.1 19500306
AT3G05120.1 CDY17662 AT2G01570.1 19500306
AT3G05120.1 CDY36236 AT2G01570.1 19500306
AT3G05120.1 CDY64837 AT2G01570.1 19500306
AT3G05120.1 CDY43122 AT3G03450.1 16709201
AT3G05120.1 CDY50707 AT3G03450.1 16709201
AT3G05120.1 CDY43122 AT3G03450.1 19500306
AT3G05120.1 CDY50707 AT3G03450.1 19500306
AT3G05120.1 CDY03475 AT4G24210.1 16709201
AT3G05120.1 CDY34266 AT4G24210.1 16709201
AT3G05120.1 CDY03475 AT4G24210.1 19500306
AT3G05120.1 CDY34266 AT4G24210.1 19500306
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27795 Canola cytosol 97.41 97.69
Bra039460.1-P Field mustard cytosol 97.41 85.35
AT3G05120.1 Thale cress cytosol 84.73 85.22
CDY16687 Canola cytosol 80.69 81.16
CDX80665 Canola cytosol 79.83 80.52
KRH33997 Soybean cytosol 74.35 75.0
KRG92803 Soybean cytosol 73.2 73.84
PGSC0003DMT400073501 Potato cytosol 73.2 72.99
Solyc01g098390.2.1 Tomato cytosol 72.33 71.92
VIT_14s0030g00440.t01 Wine grape cytosol 75.79 69.76
GSMUA_Achr3P24930_001 Banana cytosol 58.5 66.34
GSMUA_Achr5P27430_001 Banana cytosol 58.79 66.23
GSMUA_Achr8P05910_001 Banana cytosol 57.64 65.57
CDY63333 Canola cytosol 67.15 65.08
CDX89165 Canola cytosol 67.44 65.0
GSMUA_Achr10P... Banana cytosol 57.93 64.84
CDY67478 Canola cytosol 66.86 64.8
CDX67913 Canola cytosol 66.86 64.8
CDY70667 Canola cytosol 66.57 64.53
CDX93945 Canola extracellular, golgi 65.71 64.04
GSMUA_Achr6P16090_001 Banana cytosol 55.62 62.87
GSMUA_Achr5P27450_001 Banana mitochondrion 59.37 60.95
Zm00001d010308_P001 Maize cytosol, plastid 61.38 60.86
TraesCS1A01G255100.1 Wheat cytosol 61.96 60.56
TraesCS1B01G265900.1 Wheat cytosol 61.67 60.28
KXG21982 Sorghum cytosol 61.67 60.28
HORVU1Hr1G060810.1 Barley cytosol 61.38 60.17
Os05t0407500-01 Rice cytosol, nucleus 61.1 59.89
TraesCS1D01G254500.1 Wheat cytosol 61.1 59.89
Zm00001d038165_P003 Maize cytosol 60.23 59.54
CDY16855 Canola cytosol 36.6 37.91
CDX87169 Canola cytosol 36.31 37.61
CDX80370 Canola cytosol 34.87 36.12
CDX88032 Canola cytosol 34.58 35.82
CDY55764 Canola cytosol 19.6 29.06
CDX98936 Canola cytosol 27.38 28.61
CDX70090 Canola cytosol 27.38 28.61
CDX69476 Canola cytosol 27.38 28.61
CDY70129 Canola cytosol 27.38 28.53
CDX87235 Canola cytosol, nucleus, plastid 21.04 28.29
CDX81008 Canola cytosol 27.09 28.14
CDY16790 Canola cytosol 25.65 27.13
CDY18914 Canola cytosol 24.78 26.54
CDX74752 Canola cytosol 24.78 26.54
CDY18915 Canola cytosol 24.78 26.38
CDX74751 Canola cytosol 23.34 25.47
CDY30708 Canola cytosol 19.31 24.28
Protein Annotations
MapMan:11.6.2.1Gene3D:3.40.50.1820GO:A0A078HW12UniProt:A0A078HW12InterPro:AB_hydrolaseInterPro:AB_hydrolase_3
EnsemblPlants:CDY41936ProteinID:CDY41936ProteinID:CDY41936.1GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00073921001InterPro:IPR029058InterPro:Lipase_GDXG_put_SER_ASPFAM:PF07859
ScanProsite:PS01174PANTHER:PTHR23024PANTHER:PTHR23024:SF227SUPFAM:SSF53474UniParc:UPI0004EE1FCDSEG:seg
Description
BnaC05g46680DBnaC05g46680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW12]
Coordinates
chrLK032510:+:243095..244865
Molecular Weight (calculated)
38681.8 Da
IEP (calculated)
5.689
GRAVY (calculated)
-0.198
Length
347 amino acids
Sequence
(BLAST)
001: MAASDEVNLI DSKTVVPLNT WVLISTFKLS YNLLRRSDGT FNRHLAEYLD RKVTANANPE DGVFSFDVVI DRTTSLLSRV YRPAYASDQE GPVSVLDLEK
101: PLDDEIVPVI LFFHGGSFAH SSSNSKIYDT LCRRLVGACG GCVVVSVNYR RAPESPYPCA YDDGWTALNW VNSRTWLESK KDSKVRIFLA GDSSGGNIVH
201: NVALKAGEAG IDVLGNVLLN PMFGGEERTE SEKRLDGKYF VTVRDRDWYW KAFLPEGEDR EHPACNPFGA RAKSLRGLRF PKSLVVVAGL DLIQDWQLAY
301: AEGLERAGKE VRLVHLEKAT IGFYLLPNNS YFHSVMDEIA AFVNAES
Best Arabidopsis Sequence Match ( AT3G05120.1 )
(BLAST)
001: MAASDEVNLI ESRTVVPLNT WVLISNFKVA YNILRRPDGT FNRHLAEYLD RKVTANANPV DGVFSFDVLI DRRINLLSRV YRPAYADQEQ PPSILDLEKP
101: VDGDIVPVIL FFHGGSFAHS SANSAIYDTL CRRLVGLCKC VVVSVNYRRA PENPYPCAYD DGWIALNWVN SRSWLKSKKD SKVHIFLAGD SSGGNIAHNV
201: ALRAGESGID VLGNILLNPM FGGNERTESE KSLDGKYFVT VRDRDWYWKA FLPEGEDREH PACNPFSPRG KSLEGVSFPK SLVVVAGLDL IRDWQLAYAE
301: GLKKAGQEVK LMHLEKATVG FYLLPNNNHF HNVMDEISAF VNAEC
Arabidopsis Description
GID1AGID1A [Source:UniProtKB/TrEMBL;Acc:A0A178VM30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.