CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67913
CDX79294
CDX80665
CDX82568
CDX87407
CDX88507
CDX89165
CDX93945
CDX94520
CDY01615
CDY07541
CDY09318
CDY13070
CDY16687
CDY18062
CDY21311
CDY23552
CDY24237
CDY26402
CDY27795
CDY41936
CDY43390
CDY46345
CDY51918
CDY63333
CDY64561
CDY67478
CDY70667
CDY71192
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03450.1	CDX79294	AT1G79110.1	23482857
AT3G03450.1	CDX87407	AT1G79110.1	23482857
AT3G03450.1	CDX88507	AT1G79110.1	23482857
AT3G03450.1	CDY27795	AT3G05120.1	16709201
AT3G03450.1	CDY41936	AT3G05120.1	16709201
AT3G03450.1	CDY27795	AT3G05120.1	19500306
AT3G03450.1	CDY41936	AT3G05120.1	19500306
AT3G03450.1	CDX82568	AT3G12920.1	23482857
AT3G03450.1	CDY23552	AT3G12920.1	23482857
AT3G03450.1	CDY24237	AT3G12920.1	23482857
AT3G03450.1	CDY43390	AT3G12920.1	23482857
AT3G03450.1	CDY64561	AT3G12920.1	23482857
AT3G03450.1	CDX67913	AT3G63010.1	16709201
AT3G03450.1	CDX89165	AT3G63010.1	16709201
AT3G03450.1	CDX93945	AT3G63010.1	16709201
AT3G03450.1	CDY63333	AT3G63010.1	16709201
AT3G03450.1	CDY67478	AT3G63010.1	16709201
AT3G03450.1	CDY70667	AT3G63010.1	16709201
AT3G03450.1	CDX67913	AT3G63010.1	19500306
AT3G03450.1	CDX89165	AT3G63010.1	19500306
AT3G03450.1	CDX93945	AT3G63010.1	19500306
AT3G03450.1	CDY63333	AT3G63010.1	19500306
AT3G03450.1	CDY67478	AT3G63010.1	19500306
AT3G03450.1	CDY70667	AT3G63010.1	19500306
AT3G03450.1	CDX94520	AT4G19700.1	23482857
AT3G03450.1	CDY01615	AT4G19700.1	23482857
AT3G03450.1	CDY07541	AT4G19700.1	23482857
AT3G03450.1	CDY09318	AT4G19700.1	23482857
AT3G03450.1	CDY21311	AT4G19700.1	23482857
AT3G03450.1	CDY51918	AT4G19700.1	23482857
AT3G03450.1	CDY71607	AT4G19700.1	23482857
AT3G03450.1	CDX80665	AT5G27320.1	16709201
AT3G03450.1	CDY16687	AT5G27320.1	16709201
AT3G03450.1	CDX80665	AT5G27320.1	19500306
AT3G03450.1	CDY16687	AT5G27320.1	19500306
AT3G03450.1	CDY13070	AT5G45100.1	23482857
AT3G03450.1	CDY18062	AT5G45100.1	23482857
AT3G03450.1	CDY26402	AT5G45100.1	23482857
AT3G03450.1	CDY46345	AT5G45100.1	23482857
AT3G03450.1	CDY71192	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50707	Canola	cytosol, nucleus, plastid	98.32	98.56
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	85.37	70.5
AT3G03450.1	Thale cress	nucleus	76.26	58.14
CDY16915	Canola	cytosol, nucleus, plastid	58.51	46.48
CDY38434	Canola	cytosol	56.35	46.08
CDY70426	Canola	cytosol	52.28	43.0
CDY55037	Canola	cytosol	52.28	43.0
KRG97933	Soybean	nucleus	55.4	39.55
KRH30942	Soybean	cytosol	54.92	38.49
CDY04092	Canola	cytosol	48.92	38.2
CDY64837	Canola	cytosol	49.16	37.82
CDY36236	Canola	cytosol, nucleus, plastid	49.4	37.05
CDY17662	Canola	cytosol, nucleus, plastid	49.64	36.19
Solyc11g011260.1.1	Tomato	nucleus	49.4	35.03
PGSC0003DMT400040589	Potato	nucleus	49.4	35.03
CDY03601	Canola	cytosol	17.75	16.48
CDY27670	Canola	cytosol	15.59	16.09
CDY22795	Canola	cytosol, plastid	16.79	15.77
CDY50028	Canola	nucleus, plastid	15.35	15.35
CDY54362	Canola	plastid	15.35	15.2
CDY45059	Canola	cytosol	10.79	14.8
CDX78219	Canola	nucleus, plastid	20.62	14.26
CDX73496	Canola	nucleus, plastid	20.86	13.99
CDY49199	Canola	plastid	20.62	13.61
CDY47352	Canola	plastid	20.62	13.5
CDY68881	Canola	cytosol	7.67	13.11
CDY53846	Canola	cytosol	18.23	13.04
CDY72338	Canola	cytosol	17.99	12.82
CDY70213	Canola	plastid	19.66	12.75
CDY45974	Canola	plastid	19.66	12.71
CDY64484	Canola	mitochondrion	7.19	12.2
CDY43123	Canola	cytosol, extracellular, plastid	1.68	11.48
CDY50706	Canola	cytosol, extracellular, plastid	1.68	11.48
CDY37137	Canola	plastid	17.27	7.55

Protein Annotations

Gene3D:1.10.10.1290	MapMan:11.6.2.2	MapMan:15.5.12	GO:A0A078HZ07	UniProt:A0A078HZ07	EnsemblPlants:CDY43122
ProteinID:CDY43122	ProteinID:CDY43122.1	InterPro:DELLA_N_sf	GO:GO:0000989	GO:GO:0003674	GO:GO:0003712
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00076093001
InterPro:IPR005202	InterPro:IPR038088	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF47	SMART:SM01129	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS	UniParc:UPI0004EDF91B

Description

BnaA05g32640DBnaA05g32640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ07]

Coordinates

chrLK032546:+:10586..11954

Molecular Weight (calculated)

45355.3 Da

IEP (calculated)

4.585

GRAVY (calculated)

-0.316

Length

417 amino acids

Sequence
(BLAST)

001: MKRGHGETWD PAPQSQQPSG SCEGSSMADN MKGKMADDSN MDELLEVLGY KVRSSEMAEV AQKLEQLEMV LSNDDVGSTV LNDTVHYNPS DLSNWVETML
101: SELNNPEPSD LDPTRICEDR SEYGLSAIPG LSAFPKAEEG ADEEASSKRI RLESVGSWGE LTRPVVVVDS QETGVRLVHA LVACAEAIQQ QDLNLADALV
201: KSVGTLAASQ AGAMGKVATY FAQGLARRIY AADLTVTGGS SVGPSFEEAL QMHFYESCPY LKFAHFTANQ AILEAVTTAR RVHVIDLGLN QGMQWPALMQ
301: ALAVRPGGPP SFRLTGVGPP QTDSSDSLQQ LGWKLAQFAQ AIGVEFEFKG LAAESLSDLE PEMFETRPES ETLVRTTTAS FFSIGSTKRF TTTRACSTRW
401: KTVTPYRAKT ESCRRFT

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.