CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54362	Canola	plastid	98.08	97.15
Bra038002.1-P	Field mustard	nucleus, plastid	99.52	93.68
AT1G55580.1	Thale cress	plastid	88.25	82.7
VIT_19s0015g01930.t01	Wine grape	cytosol	55.4	55.93
Solyc07g066250.1.1	Tomato	nucleus	52.52	51.17
PGSC0003DMT400057265	Potato	nucleus, plastid	52.28	50.58
GSMUA_Achr1P19470_001	Banana	nucleus	44.6	48.56
GSMUA_AchrUn_...	Banana	cytosol	44.36	48.43
GSMUA_Achr1P09360_001	Banana	cytosol	42.45	47.97
GSMUA_Achr7P16880_001	Banana	cytosol	41.49	45.65
CDY43123	Canola	cytosol, extracellular, plastid	6.0	40.98
CDY50706	Canola	cytosol, extracellular, plastid	6.0	40.98
TraesCS6A01G159500.1	Wheat	cytosol	38.37	40.82
TraesCS6D01G153000.1	Wheat	cytosol	38.13	40.25
TraesCS6B01G191800.1	Wheat	cytosol	38.13	40.25
TraesCS7A01G382800.1	Wheat	cytosol	40.53	39.67
KXG29713	Sorghum	cytosol	37.65	39.55
TraesCS7D01G379200.1	Wheat	cytosol	40.29	39.53
HORVU7Hr1G091000.1	Barley	cytosol	40.29	39.44
TraesCS7B01G285500.1	Wheat	cytosol	40.53	39.39
Os06t0610350-01	Rice	cytosol	39.57	37.41
Zm00001d046783_P001	Maize	mitochondrion	40.29	36.84
CDY64484	Canola	mitochondrion	21.58	36.59
Zm00001d015815_P001	Maize	cytosol	35.97	36.06
HORVU6Hr1G033280.1	Barley	cytosol	38.37	35.87
OQU76691	Sorghum	cytosol, extracellular	40.05	35.68
Os02t0197300-00	Rice	cytosol	37.89	35.43
CDY45059	Canola	cytosol	23.74	32.57
CDY27670	Canola	cytosol	31.18	32.18
CDY68881	Canola	cytosol	18.47	31.56
CDY22795	Canola	cytosol, plastid	30.22	28.38
CDY03601	Canola	cytosol	29.98	27.84
CDY55037	Canola	cytosol	30.7	25.25
CDY70426	Canola	cytosol	30.46	25.05
CDY38434	Canola	cytosol	29.26	23.92
CDY16915	Canola	cytosol, nucleus, plastid	29.5	23.43
CDX78219	Canola	nucleus, plastid	32.61	22.55
CDY36236	Canola	cytosol, nucleus, plastid	29.98	22.48
CDX73496	Canola	nucleus, plastid	32.61	21.86
CDY17662	Canola	cytosol, nucleus, plastid	29.5	21.5
CDY53846	Canola	cytosol	29.5	21.1
CDY72338	Canola	cytosol	29.5	21.03
CDY70213	Canola	plastid	31.89	20.68
CDY45974	Canola	plastid	31.41	20.31
CDY04092	Canola	cytosol	25.66	20.04
CDY49199	Canola	plastid	30.22	19.94
CDY64837	Canola	cytosol	25.9	19.93
CDY47352	Canola	plastid	30.22	19.78
CDY43122	Canola	nucleus	15.35	15.35
CDY50707	Canola	cytosol, nucleus, plastid	15.11	15.14
CDY37137	Canola	plastid	29.5	12.89

Protein Annotations

MapMan:15.5.12	GO:A0A078ILY5	UniProt:A0A078ILY5	EnsemblPlants:CDY50028	ProteinID:CDY50028	ProteinID:CDY50028.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010223	EnsemblPlantsGene:GSBRNA2T00095779001	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF2	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS	UniParc:UPI0004EEA31A	SEG:seg

Description

BnaA06g00290DBnaA06g00290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILY5]

Coordinates

chrLK032875:-:63896..65221

Molecular Weight (calculated)

46300.9 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.117

Length

417 amino acids

Sequence
(BLAST)

001: MLASFKSSSS SSEDATENPP PPPPLCLASS SAATSAAHHL RRLLFTAADF ISQSNVSAAQ NILSILSSNS SPYGDSTERL VHLFTKALSV RIGLSENTAT
101: WTANEMASSS TSCYYLWLNQ LTPFIRFSHL TANQAILDAT ETNNGNGALH ILDLDISQGL QWPPLMQALA ERSSSNPSST PPPSLRITGC GRDVTVLNRT
201: GDRLTRFANS LGLQFQFHTL VIAEEDLAGL LLQIRLLALS AVQGESIAVN CVHFLHRFFN DDGDMIGHFL SAIKSLNPRI VTMAEREANH GDPSFLTRFS
301: EALDHFMAIF DSLEATLPPN SRERLTLEQR WFGMEILDVV AAEAAERKQR HRRFEVWEEM MKRHGFANVP IGSFAFSQAK LLLRLHYPSE GYNLQFLNDS
401: LFLGWKNRLL FSVSSWK

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.