Factsheet for VIT_19s0015g01930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066250.1.1	Tomato	nucleus	69.25	66.82
PGSC0003DMT400057265	Potato	nucleus, plastid	69.01	66.13
GSMUA_Achr1P09360_001	Banana	cytosol	53.51	59.89
GSMUA_Achr1P19470_001	Banana	nucleus	55.45	59.79
GSMUA_AchrUn_...	Banana	cytosol	55.21	59.69
GSMUA_Achr7P16880_001	Banana	cytosol	51.33	55.94
CDY50028	Canola	nucleus, plastid	55.93	55.4
CDY54362	Canola	plastid	54.96	53.92
Bra038002.1-P	Field mustard	nucleus, plastid	55.69	51.92
AT1G55580.1	Thale cress	plastid	55.45	51.46
TraesCS6D01G153000.1	Wheat	cytosol	45.28	47.34
TraesCS6A01G159500.1	Wheat	cytosol	44.55	46.94
TraesCS6B01G191800.1	Wheat	cytosol	44.55	46.58
TraesCS7A01G382800.1	Wheat	cytosol	47.7	46.24
TraesCS7D01G379200.1	Wheat	cytosol	47.46	46.12
TraesCS7B01G285500.1	Wheat	cytosol	47.7	45.92
HORVU7Hr1G091000.1	Barley	cytosol	47.22	45.77
KXG29713	Sorghum	cytosol	43.83	45.59
Os06t0610350-01	Rice	cytosol	46.0	43.08
Zm00001d046783_P001	Maize	mitochondrion	46.73	42.32
Zm00001d015815_P001	Maize	cytosol	41.89	41.59
HORVU6Hr1G033280.1	Barley	cytosol	44.79	41.48
OQU76691	Sorghum	cytosol, extracellular	46.0	40.6
Os02t0197300-00	Rice	cytosol	43.83	40.58
VIT_03s0017g01660.t01	Wine grape	plastid	33.41	31.22
VIT_18s0076g00200.t01	Wine grape	cytosol	23.49	29.75
VIT_13s0019g01220.t01	Wine grape	cytosol	33.17	28.66
VIT_07s0005g03700.t01	Wine grape	cytosol	32.69	27.72
VIT_06s0009g02390.t01	Wine grape	cytosol	31.72	27.64
VIT_17s0000g10300.t01	Wine grape	nucleus	32.2	25.63
VIT_19s0085g00540.t01	Wine grape	cytosol	30.75	23.96
VIT_14s0006g00640.t01	Wine grape	cytosol	32.69	23.73
VIT_11s0016g04630.t01	Wine grape	plastid	30.27	23.5
VIT_14s0068g01610.t01	Wine grape	plastid	36.56	22.6
VIT_04s0023g01660.t01	Wine grape	cytosol	33.17	22.35
VIT_01s0011g05260.t01	Wine grape	cytosol	30.75	21.53
VIT_02s0025g04000.t01	Wine grape	plastid	33.66	21.19
VIT_08s0056g00050.t01	Wine grape	nucleus	36.32	19.18

Protein Annotations

EntrezGene:100261722	wikigene:100261722	MapMan:15.5.12	ProteinID:CBI39870	ProteinID:CBI39870.3	UniProt:D7UAV5
EMBL:FN596747	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010223	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100261722	wikigene:LOC100261722
PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF2	InterPro:Scarecrow-like_18/MOC1	InterPro:TF_GRAS
UniParc:UPI00019859D7	ArrayExpress:VIT_19s0015g01930	EnsemblPlantsGene:VIT_19s0015g01930	EnsemblPlants:VIT_19s0015g01930.t01	RefSeq:XP_002265645	RefSeq:XP_002265645.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:10747971..10749212

Molecular Weight (calculated)

46535.5 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.157

Length

413 amino acids

Sequence
(BLAST)

001: MLGSFSSSHE EEEDPSDLQY QIPQPSRAFS PPAIQMRQLL ISCAELVSQS DFSAARRLLS ILSSNSSPFG DSTERLVHQF SAALSLRLSR YATPATSSGA
101: MSASANTAAA DSEAFHSTYL SLNQITPFIR FSQLTANQAI LEAIEGQRAI HILDFDIMHG VQWPPLMQAI AERCGNLHPP PMIRITGTGE DLGILQRTGD
201: RLLKFAQSLG LKFQFHPLLL RNDPTSVPLY LPSALQLLPD ETLAVNCVLY LHRLLKDDSR DLRLFLHKIK AMEPKVVTIA EREANHNHPL FLQRFVEALD
301: HYTAVFDSLE ATLPPTSRER LAVERIWFGR EIVDIVSAEG DNRRERHERF ESWEVMLRSS GFSNVPLSPF ALSQAKLLLR LHYPSEGYRL QIINDSFFLG
401: WQNQALFSVS SWH

Best Arabidopsis Sequence Match ( AT1G55580.1 )
(BLAST)

001: MLTSFKSSSS SSEDATATTT ENPPPLCIAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDQ
101: TAETVATWTT NEMTMSNSTV FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH ILDLDISQGL QWPPLMQALA
201: ERSSNPSSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG LQFQFHTLVI VEEDLAGLLL QIRLLALSAV QGETIAVNCV HFLHKIFNDD GDMIGHFLSA
301: IKSLNSRIVT MAEREANHGD HSFLNRFSEA VDHYMAIFDS LEATLPPNSR ERLTLEQRWF GKEILDVVAA EETERKQRHR RFEIWEEMMK RFGFVNVPIG
401: SFALSQAKLL LRLHYPSEGY NLQFLNNSLF LGWQNRPLFS VSSWK

Arabidopsis Description

SCL18SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.