Factsheet for VIT_14s0006g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g00110.t01	nucleus
VIT_07s0104g00930.t01
VIT_10s0003g03790.t01	nucleus
VIT_10s0003g03800.t01	nucleus
VIT_10s0003g03810.t01	nucleus
VIT_10s0042g01070.t01
VIT_11s0016g00710.t01	nucleus
VIT_14s0030g00440.t01
VIT_19s0027g00740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G66350.1	VIT_19s0027g00740.t01	AT1G79110.1	23482857
AT1G66350.1	VIT_14s0030g00440.t01	AT3G05120.1	16709201
AT1G66350.1	VIT_14s0030g00440.t01	AT3G05120.1	19500306
AT1G66350.1	VIT_19s0027g00740.t01	AT3G12920.1	23482857
AT1G66350.1	VIT_07s0104g00930.t01	AT3G63010.1	16709201
AT1G66350.1	VIT_07s0104g00930.t01	AT3G63010.1	19500306
AT1G66350.1	VIT_10s0042g01070.t01	AT4G19700.1	23482857
AT1G66350.1	VIT_14s0030g00440.t01	AT5G27320.1	16709201
AT1G66350.1	VIT_14s0030g00440.t01	AT5G27320.1	19500306
AT1G66350.1	VIT_10s0042g01070.t01	AT5G45100.1	23482857
AT3G03450.1	VIT_19s0027g00740.t01	AT1G79110.1	23482857
AT3G03450.1	VIT_14s0030g00440.t01	AT3G05120.1	16709201
AT3G03450.1	VIT_14s0030g00440.t01	AT3G05120.1	19500306
AT3G03450.1	VIT_19s0027g00740.t01	AT3G12920.1	23482857
AT3G03450.1	VIT_07s0104g00930.t01	AT3G63010.1	16709201
AT3G03450.1	VIT_07s0104g00930.t01	AT3G63010.1	19500306
AT3G03450.1	VIT_10s0042g01070.t01	AT4G19700.1	23482857
AT3G03450.1	VIT_14s0030g00440.t01	AT5G27320.1	16709201
AT3G03450.1	VIT_14s0030g00440.t01	AT5G27320.1	19500306
AT3G03450.1	VIT_10s0042g01070.t01	AT5G45100.1	23482857
AT5G17490.1	VIT_11s0016g00710.t01	AT1G19180.1	22892320
AT5G17490.1	VIT_11s0016g00710.t01	AT1G19180.1	22892320
AT5G17490.1	VIT_04s0008g00110.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03790.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03800.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03810.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_04s0008g00110.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03790.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03800.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_10s0003g03810.t01	AT1G30135.1	22892320
AT5G17490.1	VIT_19s0027g00740.t01	AT1G79110.1	23482857
AT5G17490.1	VIT_19s0027g00740.t01	AT3G12920.1	23482857
AT5G17490.1	VIT_10s0042g01070.t01	AT4G19700.1	23482857
AT5G17490.1	VIT_10s0042g01070.t01	AT5G45100.1	23482857

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43123	Canola	cytosol, extracellular, plastid	8.96	83.61
CDY50706	Canola	cytosol, extracellular, plastid	8.96	83.61
Bra039762.1-P	Field mustard	cytosol	58.88	68.65
AT1G66350.1	Thale cress	cytosol	60.46	67.32
VIT_01s0011g05260.t01	Wine grape	cytosol	69.07	66.61
KRG97933	Soybean	nucleus	68.37	66.61
Solyc11g011260.1.1	Tomato	nucleus	68.37	66.16
PGSC0003DMT400040589	Potato	nucleus	68.19	65.99
KRH30942	Soybean	cytosol	68.37	65.38
AT3G03450.1	Thale cress	nucleus	60.98	63.44
Bra013973.1-P	Field mustard	cytosol	57.29	62.1
AT5G17490.1	Thale cress	cytosol	56.77	61.76
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	54.66	61.58
VIT_11s0016g04630.t01	Wine grape	plastid	44.29	47.37
VIT_18s0076g00200.t01	Wine grape	cytosol	18.98	33.13
VIT_19s0015g01930.t01	Wine grape	cytosol	23.73	32.69
VIT_03s0017g01660.t01	Wine grape	plastid	25.31	32.58
VIT_13s0019g01220.t01	Wine grape	cytosol	26.54	31.59
VIT_06s0009g02390.t01	Wine grape	cytosol	25.13	30.17
VIT_17s0000g10300.t01	Wine grape	nucleus	27.24	29.87
VIT_19s0085g00540.t01	Wine grape	cytosol	27.24	29.25
VIT_07s0005g03700.t01	Wine grape	cytosol	24.25	28.34
VIT_14s0068g01610.t01	Wine grape	plastid	33.04	28.14
VIT_02s0025g04000.t01	Wine grape	plastid	27.77	24.09
VIT_04s0023g01660.t01	Wine grape	cytosol	23.73	22.02
VIT_08s0056g00050.t01	Wine grape	nucleus	29.88	21.74

Protein Annotations

Gene3D:1.10.10.1290	EntrezGene:100253268	wikigene:100253268	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1
EMBL:AM470304	ProteinID:CAN59753	ProteinID:CAN59753.1	ProteinID:CCB57620	ProteinID:CCB57620.1	ncoils:Coil
InterPro:DELLA_N_sf	UniProt:F6HSI0	EMBL:FN596245	GO:GO:0000003	GO:GO:0000989	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003712	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009791
GO:GO:0009863	GO:GO:0009867	GO:GO:0009938	GO:GO:0009987	GO:GO:0010187	GO:GO:0042538
GO:GO:0043565	GO:GO:2000033	GO:GO:2000377	InterPro:IPR005202	InterPro:IPR038088	EntrezGene:LOC100253268
wikigene:LOC100253268	PFAM:PF03514	PFAM:PF12041	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47
SMART:SM01129	TIGR:TC66881	TIGR:TC71107	InterPro:TF_DELLA	InterPro:TF_DELLA_N	InterPro:TF_GRAS
UniParc:UPI0002109935	ArrayExpress:VIT_14s0006g00640	EnsemblPlantsGene:VIT_14s0006g00640	EnsemblPlants:VIT_14s0006g00640.t01	unigene:Vvi.11932	RefSeq:XP_002266267
RefSeq:XP_002266267.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:+:14806872..14809122

Molecular Weight (calculated)

61970.2 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.219

Length

569 amino acids

Sequence
(BLAST)

001: MDELLAVLGY NVRSSDMVDV AQKLEQLEMV MGNAQEDGIS HLSSGTVHYN PSDLSGWVQS MLTELNPPSS AFASSSQQTP IDDPLLAPSE SSTITTLDFS
101: GSRQQSEHQS RIYNDNSDYD LSAIPGVAVY RRPDQQGDGE KSSKRMKTAS SSSSSSTQQV QENGLASVAE STRPVVVVDS QETGVRLVHT LMACADAVQQ
201: DNMKLADALV KHIGLLAASQ AGAMRKVATY FAEALARRIY RIYPQDSLES SYSDILQMHF YEACPYLKFA HFTANQAILE AFAGANRVHV IDFGLKQGMQ
301: WPALMQALAL RPGGPPSFRL TGIGPPQPDN TDALQQVGWK LAQLAETIGV EFEFRGFVAN SLADLEPSML QIRPPEVEAV AVNSVLELHR LLARPGAIEK
401: VLSSIKAMKP KIVTVVEQEA SHNGPVFLDR FTEALHYYSN LFDSLEGCGV SPPSSQDLMM SEIYLGRQIC NVVACEGAER VERHETLSQW RSRMGSAGFD
501: PVHLGSNAFK QASMLLALFA GGDGYRVEEN NGCLMLGWHT RPLIATSAWQ LNSNFNPTST SASTSAHSQ

Best Arabidopsis Sequence Match ( AT2G01570.1 )
(BLAST)

001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY

Arabidopsis Description

RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.