Factsheet for VIT_10s0042g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03230.t01
VIT_04s0069g00920.t01
VIT_05s0020g03180.t01
VIT_05s0102g00080.t01
VIT_07s0151g01000.t01
VIT_09s0002g02240.t01
VIT_11s0052g00450.t01
VIT_14s0083g00170.t01
VIT_18s0001g10030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	VIT_04s0069g00920.t01	AT2G24570.1	21798944
AT4G19700.1	VIT_11s0052g00450.t01	AT2G24570.1	21798944
AT4G19700.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT4G19700.1	VIT_09s0002g02240.t01	AT3G13860.1	21798944
AT4G19700.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT4G19700.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT4G19700.1	VIT_18s0001g10030.t01	AT4G24240.1	21798944
AT4G19700.1	VIT_04s0069g00920.t01	AT4G31550.1	21798944
AT4G19700.1	VIT_11s0052g00450.t01	AT4G31550.1	21798944
AT4G19700.1	VIT_04s0023g03230.t01	AT4G36110.1	21798944
AT4G19700.1	VIT_14s0083g00170.t01	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11729	Soybean	nucleus	54.46	52.72
KRH36722	Soybean	nucleus	53.8	52.58
PGSC0003DMT400062617	Potato	nucleus	51.49	52.0
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	53.8	50.46
VIT_19s0027g00740.t01	Wine grape	nucleus	50.83	49.84
CDX94520	Canola	cytosol	37.95	49.15
CDY07541	Canola	cytosol	37.95	49.15
CDY09318	Canola	cytosol	37.95	49.15
CDY21311	Canola	cytosol	37.95	49.15
KRG89416	Soybean	nucleus	50.83	49.04
KRH50476	Soybean	cytosol, nucleus, plastid	51.49	48.75
Solyc02g069180.2.1	Tomato	plastid	44.22	47.35
AT5G45100.1	Thale cress	cytosol	45.87	47.28
Solyc02g031710.2.1	Tomato	nucleus	47.85	46.77
AT4G19700.1	Thale cress	cytosol	46.53	46.38
Bra013423.1-P	Field mustard	nucleus	44.88	45.95
CDY01615	Canola	cytosol	45.87	45.57
CDY71607	Canola	cytosol	45.21	44.77
Bra012532.1-P	Field mustard	nucleus	45.21	44.77
CDY51918	Canola	cytosol	42.24	44.6
GSMUA_Achr5P02100_001	Banana	plastid	35.64	44.26
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	43.23	44.26
CDY26402	Canola	cytosol	42.9	43.92
GSMUA_Achr7P00850_001	Banana	plastid	33.0	43.48
GSMUA_Achr2P13160_001	Banana	plastid	35.31	43.32
GSMUA_Achr4P32070_001	Banana	nucleus	40.59	43.01
CDY71192	Canola	cytosol	38.28	41.43
GSMUA_Achr4P23050_001	Banana	nucleus	25.41	40.96
CDY13070	Canola	cytosol	37.29	40.5
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	36.96	40.14
GSMUA_Achr4P28300_001	Banana	nucleus	31.68	39.83
GSMUA_Achr6P31690_001	Banana	nucleus	38.28	38.93
CDY18062	Canola	cytosol	35.31	37.94
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	35.31	37.94
CDY46345	Canola	cytosol	34.65	37.23
GSMUA_Achr9P09830_001	Banana	nucleus	36.63	34.58
TraesCS3D01G441300.1	Wheat	mitochondrion	32.67	34.14
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	26.73	33.89
TraesCS3B01G484600.1	Wheat	cytosol	30.69	33.82
TraesCS7D01G431300.1	Wheat	mitochondrion	34.65	33.55
TraesCS3D01G441000.1	Wheat	mitochondrion	32.01	33.45
TraesCS3A01G448500.1	Wheat	mitochondrion	32.34	33.45
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	32.67	32.67
HORVU4Hr1G003180.3	Barley	mitochondrion	32.67	32.25
TraesCS7A01G442300.1	Wheat	mitochondrion	33.33	31.86
TraesCS4A01G293700.1	Wheat	mitochondrion	32.34	31.82
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	28.38	31.73
TraesCS7B01G340700.1	Wheat	mitochondrion	32.67	31.73
HORVU7Hr1G100540.2	Barley	mitochondrion	31.68	31.58
TraesCS7A01G442100.1	Wheat	mitochondrion	32.67	31.53
TraesCS4B01G019600.1	Wheat	mitochondrion	32.01	31.29
TraesCS7B01G340600.1	Wheat	mitochondrion	32.01	31.09
VIT_03s0038g02450.t01	Wine grape	nucleus	22.11	31.02
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	31.02	30.62
HORVU6Hr1G021880.1	Barley	plastid	26.07	30.27
HORVU6Hr1G021960.1	Barley	plastid	26.07	30.27
TraesCS7B01G340500.1	Wheat	mitochondrion	31.35	30.16
TraesCS7A01G441900.1	Wheat	mitochondrion	31.02	29.75
EER91098	Sorghum	nucleus	34.65	29.58
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	30.36	29.3
TraesCS7D01G431200.1	Wheat	mitochondrion	29.37	28.9
TraesCS6B01G149100.1	Wheat	nucleus	24.42	28.14
TraesCS6A01G120700.1	Wheat	nucleus	24.42	28.14
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	30.36	27.88
TraesCS6D01G110700.1	Wheat	nucleus	24.09	27.76
VIT_17s0000g08570.t01	Wine grape	nucleus	27.72	25.15
VIT_18s0001g14740.t01	Wine grape	cytosol	23.43	24.83
Zm00001d033419_P001	Maize	plastid	22.77	24.64
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	27.39	24.63
VIT_01s0127g00360.t01	Wine grape	nucleus	24.09	20.68
VIT_18s0001g10370.t01	Wine grape	nucleus	19.8	18.29

Protein Annotations

EntrezGene:100245970	wikigene:100245970	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A5C0L0	EMBL:AM477885
ProteinID:CAN83796	ProteinID:CAN83796.1	ProteinID:CCB52126	ProteinID:CCB52126.1	ncoils:Coil	InterPro:E3ligase_BOI_like
EMBL:FN595766	InterPro:IPR013083	EntrezGene:LOC100245970	wikigene:LOC100245970	PFAM:PF13920	PIRSF:PIRSF036836
PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	UniParc:UPI0001524CC8	ArrayExpress:VIT_10s0042g01070	EnsemblPlantsGene:VIT_10s0042g01070	EnsemblPlants:VIT_10s0042g01070.t01
unigene:Vvi.3894	RefSeq:XP_002272807	RefSeq:XP_002272807.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:14814141..14815560

Molecular Weight (calculated)

33565.8 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.548

Length

303 amino acids

Sequence
(BLAST)

001: MAVEAPHVNL FPSQPITNRS FPNTNNGNYH TLIQSDLPLA GAIAETFLPM YQSSFCDAKA PVKADSGLTY NIPVPRKRSR DWMSNQQSVF DVSSLFGEEL
101: SLQMQQQQLE IDRLIAENTE KVRLEVQERR KRQSRMLVNA IHQGIGKKLK EKDEEIQRIG KLNWLLQERV RTLSVENQIW RELAQTNEAT ANSLRTNLEQ
201: VLAHVTEERQ CGGGGGEGGA AEEEAESCCG SNGEERGECG GERGNEGEKS EKRKCRKCGV GESCVLLLPC RHLCICTACG STTLTTCPVC NSVINASIHV
301: NMS

Best Arabidopsis Sequence Match ( AT4G19700.1 )
(BLAST)

001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS

Arabidopsis Description

BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.