Factsheet for VIT_11s0052g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT2G24570.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871
AT2G24570.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944
AT4G31550.1	VIT_06s0009g01910.t01	AT3G56800.1	15733871
AT4G31550.1	VIT_08s0040g00470.t01	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g00920.t01	Wine grape	nucleus	69.39	50.3
CDX72310	Canola	nucleus	56.33	48.59
CDY20325	Canola	nucleus	55.51	48.06
CDY13441	Canola	nucleus	55.92	46.76
CDY60852	Canola	nucleus	56.73	46.64
Bra011282.1-P	Field mustard	nucleus	60.0	45.65
CDY36432	Canola	nucleus	52.24	45.39
CDX68763	Canola	nucleus	55.1	45.3
Bra023998.1-P	Field mustard	nucleus	59.18	44.21
AT4G31550.1	Thale cress	nucleus	58.37	44.0
CDY45583	Canola	nucleus	58.37	44.0
AT2G24570.1	Thale cress	nucleus	57.55	43.93
CDY23304	Canola	nucleus	54.29	43.46
Bra032084.1-P	Field mustard	nucleus	57.14	43.08
PGSC0003DMT400024632	Potato	nucleus	57.55	42.22
Solyc08g006320.2.1	Tomato	nucleus	56.33	42.07
Bra010231.1-P	Field mustard	nucleus	56.73	41.87
PGSC0003DMT400075531	Potato	nucleus	52.24	41.03
KRH05637	Soybean	nucleus	41.22	36.33
VIT_18s0001g10030.t01	Wine grape	nucleus	46.12	35.42
VIT_07s0031g00080.t01	Wine grape	nucleus	48.16	35.12
Solyc12g096350.1.1	Tomato	nucleus	47.76	34.62
VIT_07s0141g00680.t01	Wine grape	nucleus	37.96	27.35
VIT_14s0081g00560.t01	Wine grape	nucleus	37.96	25.69
VIT_00s2547g00010.t01	Wine grape	nucleus	14.29	15.22
VIT_10s0003g01600.t01	Wine grape	nucleus	14.29	12.59
VIT_15s0046g02190.t01	Wine grape	nucleus	15.92	11.21
VIT_16s0050g01480.t01	Wine grape	mitochondrion	8.16	10.99
VIT_02s0025g00420.t01	Wine grape	nucleus	14.69	10.94
VIT_07s0005g01520.t01	Wine grape	nucleus	10.61	10.74
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	13.47	10.58

Protein Annotations

EntrezGene:100251308	wikigene:100251308	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:ACY25182	ProteinID:ACY25182.1
ProteinID:CCB44674	ProteinID:CCB44674.1	UniProt:F6GXI8	EMBL:FN594964	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EMBL:GU056837	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFAM:PF10533	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF18	SUPFAM:SSF118290
TIGR:TC65678	UniParc:UPI0002108F7C	ArrayExpress:VIT_11s0052g00450	EnsemblPlantsGene:VIT_11s0052g00450	EnsemblPlants:VIT_11s0052g00450.t01	unigene:Vvi.11310
EntrezGene:WKRY	wikigene:WKRY	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002266188	RefSeq:XP_002266188.1
InterPro:Zn-cluster-dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:17821900..17823218

Molecular Weight (calculated)

26715.7 Da

IEP (calculated)

10.557

GRAVY (calculated)

-0.586

Length

245 amino acids

Sequence
(BLAST)

001: MAVDFLGFSK MDEQMAIQEA ASAGLKSMEH LILLLNHHHP QSQQINHFDC REITDFTVSK FKQVISILNR TGHARFRRGP VTSSPSQSPY DLSNKSELPK
101: PVESSPFHSN LILSAKPDPL KSEGNASVSS TTSSFLSSIT GDGSVSNGKL GTPLFAPPPA PAVSAGKPPL SSSQRRKCHE HGSSDNISGK LSVSGRCHCS
201: KRRKNRVKRT IRVPAISSKI ADIPADEYSW RKYGQKPIKG SPYPR

Best Arabidopsis Sequence Match ( AT4G31550.1 )
(BLAST)

001: MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNVDCSEI TDFTVSKFKT VISLLNRTGH ARFRRGPVHS TSSAASQKLQ SQIVKNTQPE
101: APIVRTTTNH PQIVPPPSSV TLDFSKPSIF GTKAKSAELE FSKENFSVSL NSSFMSSAIT GDGSVSNGKI FLASAPLQPV NSSGKPPLAG HPYRKRCLEH
201: EHSESFSGKV SGSAYGKCHC KKSRKNRMKR TVRVPAISAK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSTFRGCPAR KHVERALDDP AMLIVTYEGE
301: HRHNQSAMQE NISSSGINDL VFASA

Arabidopsis Description

WRKY11Probable WRKY transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.