Factsheet for VIT_16s0050g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08822	Soybean	nucleus, plastid	36.81	26.07
Zm00001d037054_P001	Maize	nucleus	30.77	22.31
AT5G52830.1	Thale cress	nucleus	40.66	21.26
VIT_02s0025g00420.t01	Wine grape	nucleus	37.91	20.97
Zm00001d053369_P001	Maize	nucleus	41.76	20.6
KRG91594	Soybean	nucleus	36.26	20.56
Bra022612.1-P	Field mustard	nucleus	38.46	20.35
CDY27045	Canola	nucleus	38.46	20.35
Os02t0265200-01	Rice	nucleus	40.11	20.22
EES04883	Sorghum	nucleus	41.21	20.0
Zm00001d008578_P001	Maize	nucleus	37.36	19.94
KRH35230	Soybean	nucleus	32.42	19.87
CDX96157	Canola	nucleus	37.91	19.83
VIT_15s0046g02190.t01	Wine grape	nucleus	37.36	19.54
VIT_07s0005g01520.t01	Wine grape	nucleus	25.27	19.01
VIT_10s0003g05740.t01	Wine grape	nucleus, plastid	32.42	18.91
Zm00001d016052_P001	Maize	nucleus	39.56	18.8
VIT_10s0003g01600.t01	Wine grape	nucleus	27.47	17.99
KRH38335	Soybean	nucleus	36.26	17.74
TraesCS7B01G240000.1	Wheat	nucleus	34.07	17.51
EER89819	Sorghum	nucleus	33.52	17.43
TraesCS7A01G343000.2	Wheat	nucleus	33.52	17.13
TraesCS7D01G336400.1	Wheat	nucleus	33.52	17.13
KRH08826	Soybean	nucleus	37.91	16.91
Os06t0504900-00	Rice	nucleus	35.16	16.58
HORVU7Hr1G080950.1	Barley	nucleus, plastid	35.71	15.97
VIT_18s0001g10030.t01	Wine grape	nucleus	21.98	12.54
VIT_07s0031g00080.t01	Wine grape	nucleus	21.43	11.61
VIT_04s0069g00920.t01	Wine grape	nucleus	21.43	11.54
VIT_07s0141g00680.t01	Wine grape	nucleus	20.88	11.18
VIT_14s0081g00560.t01	Wine grape	nucleus	20.33	10.22
VIT_11s0052g00450.t01	Wine grape	nucleus	10.99	8.16
VIT_00s2547g00010.t01	Wine grape	nucleus	8.79	6.96

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI22627	ProteinID:CBI22627.3	ncoils:Coil	UniProt:E0CUS7
EMBL:FN595243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR32096	PANTHER:PTHR32096:SF35
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0001BE209E	ArrayExpress:VIT_16s0050g01480	EnsemblPlantsGene:VIT_16s0050g01480	EnsemblPlants:VIT_16s0050g01480.t01
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:18360079..18360711

Molecular Weight (calculated)

20506.6 Da

IEP (calculated)

5.102

GRAVY (calculated)

-1.057

Length

182 amino acids

Sequence
(BLAST)

001: MMRINAKTLS RDSWSWRKYG QKPIKGSPYP RNYYRCSTLK ACSARKQVEL SQDNPEEYIV SYIGDHIHAR PTTRRSLAGT ARNPPPAAPT SVTDLSPTTP
101: LTAHYNNKTQ KPDTENENEN SEPMFEDEEE EEEEADILTT NMQMSEETFM AMHVLNSRDS QPTIAEPHSP AKNSINAAGS SD

Best Arabidopsis Sequence Match ( AT5G52830.1 )
(BLAST)

001: MSSEDWDLFA VVRSCSSSVS TTNSCAGHED DIGNCKQQQD PPPPPLFQAS SSCNELQDSC KPFLPVTTTT TTTWSPPPLL PPPKASSPSP NILLKQEQVL
101: LESQDQKPPL SVRVFPPSTS SSVFVFRGQR DQLLQQQSQP PLRSRKRKNQ QKRTICHVTQ ENLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSSKGCLARK
201: QVERSNLDPN IFIVTYTGEH THPRPTHRNS LAGSTRNKSQ PVNPVPKPDT SPLSDTVKEE IHLSPTTPLK GNDDVQETNG DEDMVGQEVN MEEEEEEEEV
301: EEDDEEEEDD DDVDDLLIPN LAVRDRDDLF FAGSFPSWSA GSAGDGGG

Arabidopsis Description

WRKY27Probable WRKY transcription factor 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.